Genome-wide variations in a natural isolate of the nematode Caenorhabditis elegans

BMC Genomics

Table 4 Top 30 gene families and the overall impact of GVs

	Total members	Fully deleted		ORF disrupted		Radical + Moderately radical SNVs		ORF impacted
	Total members	Number	%	Number	%	Number	%	Number	%
btb	21	0	0.0	5	23.8	10	47.6	21	100.0
math	49	2	4.1	14	28.6	28	57.1	36	73.5
bath	37	4	10.8	5	13.5	18	48.6	27	73.0
fbxb	110	3	2.7	23	20.9	43	39.1	83	75.5
fbxa	194	8	4.1	31	16.0	73	37.6	144	74.2
srbc	73	1	1.4	9	12.3	25	34.2	58	79.5
srw	114	3	2.6	14	12.3	41	36.0	86	75.4
srz	66	2	3.0	9	13.6	20	30.3	48	72.7
oac	58	0	0.0	8	13.8	20	34.5	41	70.7
sri	60	0	0.0	3	5.0	21	35.0	44	73.3
fbxc	54	0	0.0	7	13.0	20	37.0	34	63.0
srh	222	6	2.7	15	6.8	63	28.4	139	62.6
srj	39	0	0.0	3	7.7	9	23.1	27	69.2
clec	256	2	0.8	31	12.1	70	27.3	143	55.9
cyp	76	0	0.0	5	6.6	20	26.3	48	63.2
sdz	36	0	0.0	6	16.7	10	27.8	17	47.2
srx	106	0	0.0	11	10.4	25	23.6	56	52.8
sre	52	0	0.0	3	5.8	9	17.3	32	61.5
scl	25	0	0.0	4	16.0	4	16.0	13	52.0
srab	23	0	0.0	2	8.7	6	26.1	11	47.8
set	32	0	0.0	1	3.1	6	18.8	18	56.3
nhr	278	0	0.0	18	6.5	52	18.7	146	52.5
srv	31	0	0.0	3	9.7	7	22.6	14	45.2
srt	66	0	0.0	7	10.6	11	16.7	33	50.0
npp	22	0	0.0	1	4.5	5	22.7	11	50.0
str	193	1	0.5	12	6.2	41	21.2	90	46.6
srg	62	0	0.0	3	4.8	9	14.5	30	48.4
gcy	32	0	0.0	1	3.1	3	9.4	17	53.1
pqn	72	0	0.0	2	2.8	11	15.3	33	45.8
tag	137	0	0.0	8	5.8	17	12.4	61	44.5

Only gene families larger than 20 genes were considered for this table. Gene families sorted by average percentage of gene family members impacted by GVs in each category. Full table is available as (Additional file 19: Table S5).

ISSN: 1471-2164