mtDNA haplogroup and single nucleotide polymorphisms structure human microbiome communities

BMC Genomics

Table 1 mtSNPs association with microbiome taxonomy profile in stool and posterior fornix samples

Sample origin	SNP	Allele frequency	Rare SNP?	Location	Codon	p-value	q-value	Taxa associated
Stool 16S
	C16266T	1.82	N	HV1	N/A	0.0001	0.008	Eggerthella
	A13434G	0.41	Y	ND5	Met- > Met	0.0006	0.045	Eubacterium,Roseburia
	T15784C	3.143	N	CYTB	Pro- > Pro	0.0006	0.045	Eubacterium,Roseburia
	T16519C	59.72	N	D-loop	N/A	0.00007	0.011	Alphaproteobacteria
	G16390A	3.32	N	D-loop	N/A	0.00002	0.003	Deltaproteobacteria, Desulfovibrionaceae
Posterior fornix 16S
	C16234T	3.59	N	HV1	N/A	0.0006	0.065	Bacteroidaceae
	T14798C	8.06	N	CYTB	Phe- > Leu	0.0006	0.065	Veillonellaceae, Dialister
	T1189C	3.85	N	12S	N/A	0.0005	0.024	Veillonellaceae

ISSN: 1471-2164