Table 3 Antimicrobial systems detected using HMM searches against the sequenced genomes
From: Genomic comparison of sporeforming bacilli isolated from milk
Strain (FSL)1 | Species | Antimicrobial system3 | Locus tag | pBLAST identity in %6[species = GenBank acc. number] |
|---|---|---|---|---|
Bacteriocins2 | ||||
R5-860 | B. sp. | Bacteriocin UvB4 | C175_07686 to C175_07731 | 100% [B. thuringiensis = WP_003302295] |
H7-687 | B. weihenstephanensis | Bacteriocin cerein 7B | C174_01754 to C174_01764 | 87.0% [B. cereus = CAJ32354.1] |
Lanthipeptide_class_I4 | C174_05773 to C174_05843 | 100% [B. cereus = WP_002128181.1] | ||
Lasso_peptide4 | C174_07587 to C174_07617 | 100% [B. cereus = WP_002128586.1] | ||
R5-213 | V. arenosi | - | - | - |
H8-237 | P. odorifer | Putative bacteriocins with double-glycine leader peptide | C17_06947 to C171_06937 | 34.3% [A. flavithermus = YP_002316950.1] |
Class II4 | C171_31256 | 82% [Paenibacillus sp. = WP_018755215.1] | ||
R7-277 | P. sp. | Lasso_peptide4 | C173_26127 to C173_26182 | 78% [Paenibacillus sp. = WP_019913509.1] |
Sactipeptides4 | C173_26762 to C173_26742 | 93% [Paenibacillus sp. = WP_017690652.1] | ||
R7-269 | P. sp. | Lasso_peptide4 | C162_11816 to C162_11871 | 78% [Paenibacillus sp. = WP_019913509.1] |
Sactipeptides4 | C162_32049 to C162_32089 | 48% [Dorea sp. = WP_005337554.1] | ||
R5-192 | P. amylolyticus | Lantibiotic mersacidin | C161_23334 to C161_23344 | 38.0% [B. cereus = ZP_17590371] |
Lasso_peptide4 | C161_09323 to C161_09363 | 56% [Paenibacillus sp. = YP_003009997.1] | ||
Sactipeptides4 | C161_03994 to C161_03969 | 49% [Paenibacillus sp. = WP_016818495.1] | ||
H7-689 | P. amylolyticus | Lantibiotic mersacidin | C170_27843 to C170_27833 | 40.0% [B. cereus = ZP_17590371] |
R5-808 | P. glucanolyticus | - | - | - |
H8-457 | P. lautus | - | - | - |
Non ribosomal peptide antibiotics | ||||
R5-860 | B. sp. | uncharacterized antibiotic5 | C175_22452 to C175_22455 | 99.8% [B. cereus = NP_832072.1] |
Gramicidin | C175_21698 to C175_21708 | 98.0% [B. cereus = ZP_17623965.1] | ||
H7-687 | B. weihenstephanensis | Uncharacterized antibiotic5 | C174_ 09897 to C174_09917 | 99.0% [B. weihenstephanensis = YP_001645029] |
Gramicidin | C174_03013 to C174_03023 | 98.0% [B. cereus = ZP_17640177.1] | ||
R5-213 | V. arenosi | - | - | - |
H8-237 | P. odorifer | - | - | - |
R7-277 | P. sp. | Mycosubtilin | C173_20341 to C173_20411 | 33.0% [B. laterosporus = ZP_16304742.1] |
Cereulide | C173_11825 to C173_11870 | 32.3% [N. punctiforme = YP_001866562.1] | ||
R7-269 | P. sp. | Uncharacterized antibiotic5 | C162_12938 to C163_12948 | 37.3% [N. punctiforme = YP_001866562.1] |
Gramicidin | C162_20656 to C162_20696 | 40.8% [A. cellulolyticus = ZP_09464526] | ||
Fusaricidin | C162_28814 to C162_28839 | 62.5% [B. thuringiensis = ZP_04087647.1] | ||
R5-192 | P. amylolyticus | Gramicidin/polymyxin | C161_02905 to C161_02925 | 87.2% [P. polymyxa = YP_003872502.1] |
Mycosubtilin | C161_22119 to C161_22129 | 53.5% [B. atrophaeus = YP_003973351.1] | ||
Iturin | C161_04861 to C161_04866 | 34.0% [P. polymyxa = YP_005960904.1] | ||
H7-689 | P. amylolyticus | Gramicidin | C170_23095 to C170_23105 | 36.3% [P. curdlanolyticus = ZP_07387013.1] |
Gramicidin/polymyxin | C170_04453 to C170_04473 | 90.2% [P. polymyxa = YP_003872502.1] | ||
Mycosubtilin | C170_20065 to C170_20070 | 53.5% [B. atrophaeus = YP_003973351.1] | ||
Iturin | C170_00119 to C170_00129 | 38.0% [P. polymyxa = YP_005960904.1] | ||
Gramicidin S | C170_21789 | 91.0% [P. polymyxa = AEZ51516] | ||
R5-808 | P. glucanolyticus | Gramicidin | C169_08418 to C169_08438 | 77.2% [P. vortex = ZP_07900219.1] |
H8-457 | P. lautus | - | - | - |