Skip to main content

Advertisement

Table 1 Differentially expressed genes for powdery mildew and woolly apple aphid resistance identified by q-value analysis

From: Mapping in an apple (Malus x domestica) F1segregating population based on physical clustering of differentially expressed genes

Seq. ID Delta expression (R-S*) q-value Malus contig hit e value Chromosome Position (Mb) Top BLAST hit annotation e value
Powdery Mildew (PM) Resistance
APPLE0FR00030459 -1.47 0.028 MDC001877.277 2E-77 2 22.4 Putative far-red impaired response protein 6E-03
APPLE0F000059353 1.67 0.026 MDC012092.687 1E-173 5 15.5 Basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 2E-07
APPLE0FR00047019 -2.82 0.013 MDC004974.297 0.0 10 27.2 No Hits Found  
APPLE0F000058978 -1.47 0.013 MDC006524.418 1E-51 11 25.6 Disease resistance protein (TIR-NBS-LRR class) 1E-05
APPLE0F000025011 1.71 2.E-05 MDC015374.161 6E-70 11 29.2 Aldo/keto reductase family protein 3E-23
APPLE0FR00035938 1.55 0.066 MDC018304.133 0.0 13 7.1 Contig hit is MDC018304.113 at 0e-0  
APPLE0F000055730 -1.40 0.023 MDC013308.308 1E-166 13 15.9 Similar to phosphoinositide phosphatase SAC1 7E-24
APPLE0FR00044992 -1.28 0.046 MDC021221.285 1E-85 12 18.9 5′ UTR for amino acyl transferase. Contig hit is MDC021221.285 at 1e-85  
APPLE0F000015813 -1.47 0.013 MDC020309.410 7E-52 12 19.1 Short-chain dehydrogenase/reductase (SDR) 6E-56
APPLE0F000001444 -1.47 0.008 MDC010597.451 0.0 12 23.2 Potassium channel tetramerisation domain-containing 4E-05
APPLE0FR00037713 -1.76 0.017 MDC021098.161 0.0 12 23.5 Possible glycoside hydrolase  
APPLE0F000016461 1.25 0.013 MDC001938.330 0.0 12 26.6 Expressed protein 3E-08
APPLE0F000004849 -1.79 0.023 MD011583.315 0.0 12 27.1 Hydrophobic protein (RCI2B)/low temperature and salt responsive protein (LTI6B) 2E-08
APPLE0F000054055 -1.52 0.015 MDC015856.337 1E-102 12 28.1 Dormancy/auxin associated family protein similar to Auxin-repressed 12.5 kDa protein 5E-23
APPLE0F000013256 -4.76 0.066 MDC17578.59 0.0 12 28.3 Similar to histone H2A Lycopersicon esculentum 1E-33
APPLE0F000001606 3.30 2.E-12 MDC016172.153 0.0 12 28.7 Amidase family protein similar to component of chloroplast outer membrane translocon Toc64 5E-56
APPLE0FR00048809 3.59 8.E-12 MDC002462.199 6E-21 12 28.7 OSJNBa0020P07.1 [Oryza sativa] emb|CAE01284.1| 1E-01
APPLE0F000002331 -1.51 0.013 MDC016716.178 1E-131 12 29.7 Esterase/lipase/thioesterase family protein contains 1E-77
APPLE0F000052120 -1.73 1E-05 MDC011503.301 1E-90 12 30.1 Aldo/keto reductase family protein 2E-69
APPLE0F000021822 5.11 2E-09 MDC011503.301 1E-71 12 30.1 Aldo/keto reductase family protein 6E-48
APPLE0F000001330 -1.79 0.004 MDC015374.161 1E-107 12 30.1 Aldo/keto reductase family protein 7E-74
APPLE0F000026140 -1.59 0.008 MDC001112.153 1E-130 12 30.2 bZIP transcription factor family protein 4E-26
APPLE0F000027353 -1.64 0.004 MDC010137.204 1E-169 12 30.7 Pex2/Pex12 N-term. domain-containing protein similar to Peroxisome assembly protein 12 2E-05
APPLE0F000002620 1.77 2E-04 MDC012984.227 1E-152 12 30.9 Expressed protein 1E-96
APPLE0F000004618 1.64 0.001 MDC003837.156 1E-163 12 31.0 Expressed protein 3E-11
APPLE0F000004776 1.39 0.002 MDC018359.70 1E-148 12 31.1 Expressed protein 6E-46
APPLE0F000002243 -1.40 0.013 MDC018666.236 0.0 12 31.1 F-box family protein/SKP1 interacting partner 3-related 1E-33
APPLE0F000017753 -1.47 0.023 MDC001897.515 1E-137 12 31.2 Protein kinase family protein contains protein kinase domain, Pfam:PF00069 7E-09
APPLE0F000016759 2.64 1E-06 MDC014107.424 0.0 12 31.2 Ferrochelatase II identical to Swiss-Prot:O04921 ferrochelatase II, 3E-30
APPLE0F000012301 -1.58 0.004 MDC022119.74 0.0 12 31.5 Acyl carrier family protein/ACP family protein similar to SP|P53665 3E-44
Woolly Apple Aphid (WAA) Resistance
APPLE0FR00041901 -0.87 0.011 MDC005468.461 2E-70 15 9.5 No Hits Found  
APPLE0FR00031359 0.96 3E-04 MDC001707.261 6E-90 15 9.5 No Hits Found  
APPLE0FR00067578 0.60 0.001 MDC0021610.17 4E-48 17 0.6 No Hits Found  
APPLE0FR00068101 -0.94 7E-04 MDC015568.269 0.0 17 1.4 No Hits Found  
APPLE00R00024612 -0.50 0.037 MDC021003.307 0.0 17 1.4 Pentatricopeptide (PPR) repeat-containing protein 8E-46
APPLE0F000027287 0.65 0.007 MDC012514.262 1E-172 17 7.2 Terpene synthase/cyclase family protein similar to myrcene/ocimene synthase 2E-15
APPLE00R00016498 -0.46 0.008 MDC008184.205 1E-179 17 9.8 Similar to ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I 3E-47
  1. *R-S = resistant - susceptible.