Table 1 Differentially expressed genes for powdery mildew and woolly apple aphid resistance identified by q-value analysis
Seq. ID | Delta expression (R-S*) | q-value | Malus contig hit | e value | Chromosome | Position (Mb) | Top BLAST hit annotation | e value |
|---|---|---|---|---|---|---|---|---|
Powdery Mildew (PM) Resistance | ||||||||
APPLE0FR00030459 | -1.47 | 0.028 | MDC001877.277 | 2E-77 | 2 | 22.4 | Putative far-red impaired response protein | 6E-03 |
APPLE0F000059353 | 1.67 | 0.026 | MDC012092.687 | 1E-173 | 5 | 15.5 | Basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 | 2E-07 |
APPLE0FR00047019 | -2.82 | 0.013 | MDC004974.297 | 0.0 | 10 | 27.2 | No Hits Found | |
APPLE0F000058978 | -1.47 | 0.013 | MDC006524.418 | 1E-51 | 11 | 25.6 | Disease resistance protein (TIR-NBS-LRR class) | 1E-05 |
APPLE0F000025011 | 1.71 | 2.E-05 | MDC015374.161 | 6E-70 | 11 | 29.2 | Aldo/keto reductase family protein | 3E-23 |
APPLE0FR00035938 | 1.55 | 0.066 | MDC018304.133 | 0.0 | 13 | 7.1 | Contig hit is MDC018304.113 at 0e-0 | |
APPLE0F000055730 | -1.40 | 0.023 | MDC013308.308 | 1E-166 | 13 | 15.9 | Similar to phosphoinositide phosphatase SAC1 | 7E-24 |
APPLE0FR00044992 | -1.28 | 0.046 | MDC021221.285 | 1E-85 | 12 | 18.9 | 5′ UTR for amino acyl transferase. Contig hit is MDC021221.285 at 1e-85 | |
APPLE0F000015813 | -1.47 | 0.013 | MDC020309.410 | 7E-52 | 12 | 19.1 | Short-chain dehydrogenase/reductase (SDR) | 6E-56 |
APPLE0F000001444 | -1.47 | 0.008 | MDC010597.451 | 0.0 | 12 | 23.2 | Potassium channel tetramerisation domain-containing | 4E-05 |
APPLE0FR00037713 | -1.76 | 0.017 | MDC021098.161 | 0.0 | 12 | 23.5 | Possible glycoside hydrolase | |
APPLE0F000016461 | 1.25 | 0.013 | MDC001938.330 | 0.0 | 12 | 26.6 | Expressed protein | 3E-08 |
APPLE0F000004849 | -1.79 | 0.023 | MD011583.315 | 0.0 | 12 | 27.1 | Hydrophobic protein (RCI2B)/low temperature and salt responsive protein (LTI6B) | 2E-08 |
APPLE0F000054055 | -1.52 | 0.015 | MDC015856.337 | 1E-102 | 12 | 28.1 | Dormancy/auxin associated family protein similar to Auxin-repressed 12.5 kDa protein | 5E-23 |
APPLE0F000013256 | -4.76 | 0.066 | MDC17578.59 | 0.0 | 12 | 28.3 | Similar to histone H2A Lycopersicon esculentum | 1E-33 |
APPLE0F000001606 | 3.30 | 2.E-12 | MDC016172.153 | 0.0 | 12 | 28.7 | Amidase family protein similar to component of chloroplast outer membrane translocon Toc64 | 5E-56 |
APPLE0FR00048809 | 3.59 | 8.E-12 | MDC002462.199 | 6E-21 | 12 | 28.7 | OSJNBa0020P07.1 [Oryza sativa] emb|CAE01284.1| | 1E-01 |
APPLE0F000002331 | -1.51 | 0.013 | MDC016716.178 | 1E-131 | 12 | 29.7 | Esterase/lipase/thioesterase family protein contains | 1E-77 |
APPLE0F000052120 | -1.73 | 1E-05 | MDC011503.301 | 1E-90 | 12 | 30.1 | Aldo/keto reductase family protein | 2E-69 |
APPLE0F000021822 | 5.11 | 2E-09 | MDC011503.301 | 1E-71 | 12 | 30.1 | Aldo/keto reductase family protein | 6E-48 |
APPLE0F000001330 | -1.79 | 0.004 | MDC015374.161 | 1E-107 | 12 | 30.1 | Aldo/keto reductase family protein | 7E-74 |
APPLE0F000026140 | -1.59 | 0.008 | MDC001112.153 | 1E-130 | 12 | 30.2 | bZIP transcription factor family protein | 4E-26 |
APPLE0F000027353 | -1.64 | 0.004 | MDC010137.204 | 1E-169 | 12 | 30.7 | Pex2/Pex12 N-term. domain-containing protein similar to Peroxisome assembly protein 12 | 2E-05 |
APPLE0F000002620 | 1.77 | 2E-04 | MDC012984.227 | 1E-152 | 12 | 30.9 | Expressed protein | 1E-96 |
APPLE0F000004618 | 1.64 | 0.001 | MDC003837.156 | 1E-163 | 12 | 31.0 | Expressed protein | 3E-11 |
APPLE0F000004776 | 1.39 | 0.002 | MDC018359.70 | 1E-148 | 12 | 31.1 | Expressed protein | 6E-46 |
APPLE0F000002243 | -1.40 | 0.013 | MDC018666.236 | 0.0 | 12 | 31.1 | F-box family protein/SKP1 interacting partner 3-related | 1E-33 |
APPLE0F000017753 | -1.47 | 0.023 | MDC001897.515 | 1E-137 | 12 | 31.2 | Protein kinase family protein contains protein kinase domain, Pfam:PF00069 | 7E-09 |
APPLE0F000016759 | 2.64 | 1E-06 | MDC014107.424 | 0.0 | 12 | 31.2 | Ferrochelatase II identical to Swiss-Prot:O04921 ferrochelatase II, | 3E-30 |
APPLE0F000012301 | -1.58 | 0.004 | MDC022119.74 | 0.0 | 12 | 31.5 | Acyl carrier family protein/ACP family protein similar to SP|P53665 | 3E-44 |
Woolly Apple Aphid (WAA) Resistance | ||||||||
APPLE0FR00041901 | -0.87 | 0.011 | MDC005468.461 | 2E-70 | 15 | 9.5 | No Hits Found | |
APPLE0FR00031359 | 0.96 | 3E-04 | MDC001707.261 | 6E-90 | 15 | 9.5 | No Hits Found | |
APPLE0FR00067578 | 0.60 | 0.001 | MDC0021610.17 | 4E-48 | 17 | 0.6 | No Hits Found | |
APPLE0FR00068101 | -0.94 | 7E-04 | MDC015568.269 | 0.0 | 17 | 1.4 | No Hits Found | |
APPLE00R00024612 | -0.50 | 0.037 | MDC021003.307 | 0.0 | 17 | 1.4 | Pentatricopeptide (PPR) repeat-containing protein | 8E-46 |
APPLE0F000027287 | 0.65 | 0.007 | MDC012514.262 | 1E-172 | 17 | 7.2 | Terpene synthase/cyclase family protein similar to myrcene/ocimene synthase | 2E-15 |
APPLE00R00016498 | -0.46 | 0.008 | MDC008184.205 | 1E-179 | 17 | 9.8 | Similar to ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I | 3E-47 |