Table 2 HLA and KIR validation
From: Exome capture from saliva produces high quality genomic and metagenomic data
| Â | Exome sequencing | Standard genotyping | Standard genotyping (excluding SA006 & SA035) | ||||
|---|---|---|---|---|---|---|---|
| Â | SNPs vs HG19a | AllelesbPresent | SNPs vs HG19 | Concordance rate (%) | SNPs vs HG19 | Concordance rate (%) | |
| Â | Â | Known | Novel | Â | Â | Â | Â |
KIR (13 genes) | 1469 | 91 | 31 | 955 | 99.99 | 670 | 99.99 |
HLA class 1 A | 690 | 16 | Â | 690 | 99.98 | 619 | 100.00 |
HLA class 1 B | 925 | 12 | Â | 925 | 99.99 | 745 | 99.99 |
HLA class 2 C | 986 | 8 | Â | 986 | 100.00 | 814 | 100.00 |