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Table 2 HLA and KIR validation

From: Exome capture from saliva produces high quality genomic and metagenomic data

  Exome sequencing Standard genotyping Standard genotyping (excluding SA006 & SA035)
  SNPs vs HG19a AllelesbPresent SNPs vs HG19 Concordance rate (%) SNPs vs HG19 Concordance rate (%)
   Known Novel     
KIR (13 genes) 1469 91 31 955 99.99 670 99.99
HLA class 1 A 690 16   690 99.98 619 100.00
HLA class 1 B 925 12   925 99.99 745 99.99
HLA class 2 C 986 8   986 100.00 814 100.00
  1. aNon-reference single nucleotide polymorphisms.
  2. bUnique coding sequences.