Table 2 HLA and KIR validation
From: Exome capture from saliva produces high quality genomic and metagenomic data
Exome sequencing | Standard genotyping | Standard genotyping (excluding SA006 & SA035) | |||||
|---|---|---|---|---|---|---|---|
SNPs vs HG19a | AllelesbPresent | SNPs vs HG19 | Concordance rate (%) | SNPs vs HG19 | Concordance rate (%) | ||
Known | Novel | ||||||
KIR (13 genes) | 1469 | 91 | 31 | 955 | 99.99 | 670 | 99.99 |
HLA class 1 A | 690 | 16 | 690 | 99.98 | 619 | 100.00 | |
HLA class 1 B | 925 | 12 | 925 | 99.99 | 745 | 99.99 | |
HLA class 2 C | 986 | 8 | 986 | 100.00 | 814 | 100.00 | |