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Table 4 KhoeSan saliva microbiome abundance by read threshold

From: Exome capture from saliva produces high quality genomic and metagenomic data

  No coverage1 75% Read coverage2
Genome 50% Identity 80% Identity 95% Identity
Neisseria subflava 0.062 0.077 0.13
Rothia mucilaginosa 0.051 0.062 0.076
Neisseria flavescens 0.031 0.039 0.063
Streptococcus parasanguinis 0.038 0.046 0.063
Prevotella melaninogenica 0.047 0.054 0.059
Veillonella dispar 0.041 0.049 0.056
Prevotella veroralis 0.027 0.031 0.029
Streptococcus salivarius 0.016 0.019 0.028
Granulicatella elegans 0.02 0.025 0.027
Fusobacterium periodonticum 0.015 0.012 0.024
  1. 1The genome-length-corrected relative abundance calculated using a 50% identity fragment recruitment threshold.
  2. 2The genome-length-corrected relative abundance calculated using fragment recruitment thresholds of 80% or 95% identity across at least 75% of the read.