Exome capture from saliva produces high quality genomic and metagenomic data

BMC Genomics

Table 4 KhoeSan saliva microbiome abundance by read threshold

	No coverage¹	75% Read coverage²
Genome	50% Identity	80% Identity	95% Identity
Neisseria subflava	0.062	0.077	0.13
Rothia mucilaginosa	0.051	0.062	0.076
Neisseria flavescens	0.031	0.039	0.063
Streptococcus parasanguinis	0.038	0.046	0.063
Prevotella melaninogenica	0.047	0.054	0.059
Veillonella dispar	0.041	0.049	0.056
Prevotella veroralis	0.027	0.031	0.029
Streptococcus salivarius	0.016	0.019	0.028
Granulicatella elegans	0.02	0.025	0.027
Fusobacterium periodonticum	0.015	0.012	0.024

¹The genome-length-corrected relative abundance calculated using a 50% identity fragment recruitment threshold.
²The genome-length-corrected relative abundance calculated using fragment recruitment thresholds of 80% or 95% identity across at least 75% of the read.

ISSN: 1471-2164