Table 4 Mapping of 15 Asian genomes onto the VCG, YH and GRCh37 reference genomes

Reference

GRCh37

46,809,092

54,343,732

58,459,936

41,735,844

46,809,092

(96.14%)

(95.58%)

(97.78%)

(97.80%)

(96.14%)

YH

46,963,414

54,578,732

58,711,122

41,929,952

46,963,414

(96.46%)

(95.99%)

(98.20%)

(98.25%)

(96.46%)

VCG

47,025,644

54,677,084

58,817,318

42,017,702

47,025,644

(96.59%)

(96.16%)

(98.37%)

(98.46%)

(96.59%)

CHD samples

NA18698

NA18699

NA18126

NA18126

NA18691

Reference

GRCh37

9,570,212

9,900,966

12,832,078

11,818,302

15,160,036

(74.52%)

(83.42%)

(70.94%)

(64.55%)

(61.13%)

YH

9,554,028

9,899,632

12,825,240

11,826,910

15,179,378

(74.39%)

(83.41%)

(70.90%)

(64.60%)

(61.20%)

VCG

9,590,720

9,931,332

12,870,814

11,880,666

15,228,994

(74.68%)

(83.68%)

(71.16%)

(64.89%)

(61.40%)

JPT samples

NA18988

NA18985

NA19084

NA18984

NA18960

Reference

GRCh37

31,213,781

4,235,400

34,476,427

9,353,246

71,376,941

(89.77%)

(97.06%)

(98.70%)

(96.88%)

(89.93%)

YH

31,338,365

4,236,640

34,514,636

9,359,975

71,711,466

(90.13%)

(97.09%)

(98.81%)

(96.95%)

(90.35%)

VCG

31,410,518

4,236,680

34,500,530

9,361,169

71,898,286

(90.34%)

(97.09%)

(98.76%)

(96.96%)

(90.59%)