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Table 3 Comparative analysis for the presence/absence of genes identified to have a positive effect on Agrobacterium virulence that are located in the genomic background (not on Ti plasmid) of Ensifer adhaerens OV14, Agrobacterium tumefaciens C58, and Sinorhizobium meliloti 1021

From: Genome sequence of Ensifer adhaerens OV14 provides insights into its ability as a novel vector for the genetic transformation of plant genomes

Gene id eggNOG id OV14 gene C58 gene 1021 gene No. species No. proteins Virulence function Product
In C58   Copy number Copy number Copy number In NOG In NOG In C58  
chvA aproNOG01094 1 1 1 52 52 Attachment Cyclic beta-1,2-glucan ABC transporter
chvB aproNOG01088 2 1 1 39 40 Attachment Cyclic beta 1-2 glucan synthase
pscA(exoC) aproNOG01465 1 1 1 65 65 Attachment Phosphoglucomutase
pcs aproNOG02893 1 1 1 37 37 Attachment Phosphatidylcholine synthase
pmtA aproNOG06650 1 1 1 58 58 Attachment Phospholipid N-methyltransferase
choX aproNOG00993 2 2 2 35 41 Attachment Choline SBP
choW aproNOG00971 1 1 1 35 35 Attachment Choline ABC ATPase
choV aproNOG02245 2 3 1 45 78 Attachment Choline ABC permease
chvD aproNOG00260 1 1 1 102 104 vir gene regulation Uracil phosphoribosyltransferase
chvE aproNOG03985 1 1 1 29 20 vir gene regulation Multiple sugar-binding periplasmic receptor
chvG aproNOG00593 1 1 1 86 89 vir gene regulation DNA-binding/iron metalloprotein/AP endonuclease
chvI aproNOG03091 1 1 1 85 87 vir gene regulation Transcriptional regulator
chvH aproNOG03687 1 1 1 50 50 vir gene regulation Elongation factor P
miaA aproNOG00010 1 1 1 116 116 vir gene regulation tRNA delta (2)-isopentenylpyrophosphate transferase
ros aproNOG09171 1 1 1 16 17 vir gene regulation Ros/MucR family transcriptional regulator
picA aproNOG09265 1 2 0 13 15 Host cell wall degradation Polygalacturonase
kdgF aproNOG11632 1 1 1 15 15 Host cell wall degradation Pectin degradation protein
ligE aproNOG03997 1 1 1 31 31 Host cell wall degradation Lignin degradation protein
acvB aproNOG05730 1 1 2 28 31 Forms complex with T-strand Acid tolerance and virulence protein
aopB aproNOG08879 1 1 1 17 17 Defence Porin-like membrane protien
katA aproNOG00015 2 1 1 51 54 Defence Catalase-Peroxidase
dps aproNOG08385 0 1 0 19 19 Defence DNA starvation/stationary phase protection protein
catE aproNOG02507 0 1 1 40 40 Defence Catalase
oxyR aproNOG01190 1 1 0 34 48 Defence Oxidative stress transcription regulator
oxyR (1021) aproNOG01330 0 0 1 33 33 Defence Oxidative stress transcription regulator
sodB aproNOG00877 2 3 1 115 122 Defence Super oxide dismutase