Table 3 Comparative analysis for the presence/absence of genes identified to have a positive effect on Agrobacterium virulence that are located in the genomic background (not on Ti plasmid) of Ensifer adhaerens OV14, Agrobacterium tumefaciens C58, and Sinorhizobium meliloti 1021
Gene id | eggNOG id | OV14 gene | C58 gene | 1021 gene | No. species | No. proteins | Virulence function | Product |
|---|---|---|---|---|---|---|---|---|
In C58 | Â | Copy number | Copy number | Copy number | In NOG | In NOG | In C58 | Â |
chvA | aproNOG01094 | 1 | 1 | 1 | 52 | 52 | Attachment | Cyclic beta-1,2-glucan ABC transporter |
chvB | aproNOG01088 | 2 | 1 | 1 | 39 | 40 | Attachment | Cyclic beta 1-2 glucan synthase |
pscA(exoC) | aproNOG01465 | 1 | 1 | 1 | 65 | 65 | Attachment | Phosphoglucomutase |
pcs | aproNOG02893 | 1 | 1 | 1 | 37 | 37 | Attachment | Phosphatidylcholine synthase |
pmtA | aproNOG06650 | 1 | 1 | 1 | 58 | 58 | Attachment | Phospholipid N-methyltransferase |
choX | aproNOG00993 | 2 | 2 | 2 | 35 | 41 | Attachment | Choline SBP |
choW | aproNOG00971 | 1 | 1 | 1 | 35 | 35 | Attachment | Choline ABC ATPase |
choV | aproNOG02245 | 2 | 3 | 1 | 45 | 78 | Attachment | Choline ABC permease |
chvD | aproNOG00260 | 1 | 1 | 1 | 102 | 104 | vir gene regulation | Uracil phosphoribosyltransferase |
chvE | aproNOG03985 | 1 | 1 | 1 | 29 | 20 | vir gene regulation | Multiple sugar-binding periplasmic receptor |
chvG | aproNOG00593 | 1 | 1 | 1 | 86 | 89 | vir gene regulation | DNA-binding/iron metalloprotein/AP endonuclease |
chvI | aproNOG03091 | 1 | 1 | 1 | 85 | 87 | vir gene regulation | Transcriptional regulator |
chvH | aproNOG03687 | 1 | 1 | 1 | 50 | 50 | vir gene regulation | Elongation factor P |
miaA | aproNOG00010 | 1 | 1 | 1 | 116 | 116 | vir gene regulation | tRNA delta (2)-isopentenylpyrophosphate transferase |
ros | aproNOG09171 | 1 | 1 | 1 | 16 | 17 | vir gene regulation | Ros/MucR family transcriptional regulator |
picA | aproNOG09265 | 1 | 2 | 0 | 13 | 15 | Host cell wall degradation | Polygalacturonase |
kdgF | aproNOG11632 | 1 | 1 | 1 | 15 | 15 | Host cell wall degradation | Pectin degradation protein |
ligE | aproNOG03997 | 1 | 1 | 1 | 31 | 31 | Host cell wall degradation | Lignin degradation protein |
acvB | aproNOG05730 | 1 | 1 | 2 | 28 | 31 | Forms complex with T-strand | Acid tolerance and virulence protein |
aopB | aproNOG08879 | 1 | 1 | 1 | 17 | 17 | Defence | Porin-like membrane protien |
katA | aproNOG00015 | 2 | 1 | 1 | 51 | 54 | Defence | Catalase-Peroxidase |
dps | aproNOG08385 | 0 | 1 | 0 | 19 | 19 | Defence | DNA starvation/stationary phase protection protein |
catE | aproNOG02507 | 0 | 1 | 1 | 40 | 40 | Defence | Catalase |
oxyR | aproNOG01190 | 1 | 1 | 0 | 34 | 48 | Defence | Oxidative stress transcription regulator |
oxyR (1021) | aproNOG01330 | 0 | 0 | 1 | 33 | 33 | Defence | Oxidative stress transcription regulator |
sodB | aproNOG00877 | 2 | 3 | 1 | 115 | 122 | Defence | Super oxide dismutase |