Table 4 Comparative analysis for the presence/absence of genes involved in attachment to plant cell that are located in the genomic background (not on Ti plasmid) of Ensifer adhaerens OV14, Agrobacterium tumefaciens C58, and Sinorhizobium meliloti 1021
Gene id | eggNOG | OV14 gene | C58 gene | 1021 gene | No. species | No. protein | Virulence function | Product |
|---|---|---|---|---|---|---|---|---|
In C58 | Â | Copy number | Copy number | Copy number | In NOG | In NOG | In C58 | Â |
celD | aproNOG11524 | 0 | 1 | 0 | 7 | 7 | Attachment | Cellulose biosynthesis protein |
celE | aproNOG04598 | 1 | 1 | 0 | 7 | 7 | Attachment | Cellulose synthesis protein |
celG | aproNOG12411 | 1 | 1 | 0 | 23 | 26 | Attachment | Cellulose synthesis protein |
celC | aproNOG07630 | 1 | 1 | 0 | 25 | 28 | Attachment | Endoglucanase |
celB | aproNOG09454 | 1 | 1 | 0 | 23 | 26 | Attachment | Cellulose synthase |
celA | aproNOG05761 | 1 | 1 | 0 | 27 | 30 | Attachment | Cellulose synthase |
attK2 | aproNOG02908 | 0 | 1 | 1 | 17 | 18 | Attachment | Semialdehyde dehydrogenase |
attA1 | aproNOG00407 | 3 | 2 | 4 | 47 | 73 | Attachment | ABC transporter, nucleotide binding/ATPase protein [putrescine] |
attA2 | aproNOG05011 | 0 | 1 | 1 | 15 | 15 | Attachment | ABC transporter, membrane spanning protein [mannopine] |
attB | aproNOG06835 | 0 | 1 | 1 | 16 | 16 | Attachment | ABC transporter, membrane spanning protein [mannopine] |
attC | aproNOG06683 | 0 | 1 | 1 | 12 | 12 | Attachment | ABC transporter, substrate binding protein [mannopine] |
attE | aproNOG05033 | 0 | 2 | 0 | 24 | 25 | Attachment | ABC transporter nucleotide binding/ATPase protein |
attF | aproNOG00433 | 0 | 3 | 0 | 24 | 26 | Attachment | ABC transporter, membrane spanning protein |
attG | aproNOG00433 | 0 | 3 | 0 | 24 | 26 | Attachment | ABC transporter, membrane spanning protein |
attH | aproNOG04763 | 0 | 2 | 0 | 22 | 23 | Attachment | Hypothetical protein |
attJ/blcR | aproNOG06067 | 0 | 1 | 0 | 17 | 17 | Attachment | Transcriptional repressor of the blcABC operon |
attK/blcA | aproNOG00713 | 4 | 3 | 5 | 88 | 141 | Attachment | NAD-dependent succinyl-semialdehyde dehydrogenase |
attL/blcB | aproNOG04363 | 0 | 1 | 1 | 15 | 19 | Attachment | Gamma hydroxybutyrate dehydrogenase |
attM/blcC | aproNOG02812 | 0 | 2 | 0 | 19 | 23 | Attachment | Zn-dependent gamma butyryl lactone lactonase |
attO | aproNOG09383 | 0 | 1 | 0 | 5 | 5 | Attachment | Transcriptional regulator, AraC family |
attR | aproNOG01724 | 0 | 2 | 1 | 24 | 27 | Attachment | Transacetylase |
attT | aproNOG12782 | 0 | 1 | 0 | 3 | 3 | Attachment | GNAT family acetyltransferase |
attV | aproNOG09482 | 0 | 1 | 0 | 12 | 12 | Attachment | Mg (2+) transport ATPase |
attY | aproNOG07710 | 0 | 1 | 0 | 45 | 48 | Attachment | Glutathione S-transferase |
attZ | aproNOG08980 | 0 | 1 | 0 | 21 | 26 | Attachment | Transcriptional regulator |