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Table 2 Binding sites throughout the entire genome identified by T-KDE for 22 transcription factors

From: T-KDE: a method for genome-wide identification of constitutive protein binding sites from multiple ChIP-seq data sets

Protein

Available cell lines

Constitutive sites

Total sites

Proportion

CTCF

55

21,812

142,087

15.35%

RAD21

9

15,337

101,434

15.12%

GABP

9

1,392

19,444

7.16%

CREB1

6

1,069

16,744

6.38%

YY1

11

2,524

52,252

4.83%

NRSF

15

1,794

40,066

4.48%

TAF1

13

1,208

27,842

4.34%

ELF1

7

860

25,991

3.31%

ZBTB33

6

465

14,429

3.22%

USF1

9

1,172

46,829

2.50%

SRF

7

231

10,263

2.25%

Pol II

19

4,733

261,043

1.81%

MAX

10

1,223

84,862

1.44%

EGR1

6

331

29,793

1.11%

SIN3A

9

116

29,446

0.39%

CEBPB

7

70

62,332

0.11%

TEAD4

8

32

58,134

0.06%

SP1

6

29

46,502

0.06%

ATF3

6

4

9,394

0.04%

P300

10

32

118,602

0.03%

TCF12

7

2

66,517

0.00%

JUND

8

2

51,580

0.00%