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Table 1 Summary of published soybean databases

From: SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways

Database Content Source
SGMD [24] Genomic data, expressed sequence tags and microarray expression experiments, Proteomics of Oilseeds http://psi081.ba.ars.usda.gov/SGMD/default.htm
SoyGD [23] Soybean physical map and genetic map using Gbrowse as platform http://soybeangenome.siu.edu/
Soybean Full-length cDNA Database [29] 40,000 full-length sequences of cDNA clones http://rsoy.psc.riken.jp/
SoyDB [30] Soybean transcription factors http://casp.rnet.missouri.edu/soydb/
SoyTEDB [31] Soybean transposable elements http://www.soybase.org/soytedb/
SoyBase [22] Comprehensive database for curated genetics, genomics, and related data resources developed by USDA-ARS http://soybase.org/
LegumeIP [32] Comparative genomics and transcriptomics database of model legumes http://plantgrn.noble.org/LegumeIP/
PlaNet [27] Whole-genome co-expression networks for seven important plant crop species http://aranet.mpimp-golm.mpg.de/
SoyKB [26] Integration of soybean omics data along with annotation of gene function and biological pathway http://soykb.org/
SoyXpress [25] Microarray expression data and expressed sequence tags [24] http://soyxpress2.agrenv.mcgill.ca/
Phytozome [33] Soybean genome sequence and gene annotation information http://www.phytozome.net/soybean
Soybean eFP Browser [34] Creates ‘electronic fluorescent pictographic’ representations of genes’ expression pattern http://soykb.org/cgi-bin_new/efpWeb.cgi
SoyProDB [35] Soybean seed proteins http://bioinformatics.towson.edu/Soybean_Seed_Proteins_2D_Gel_DB/Home.aspx
GmGDB [36] Soybean genome and gene models http://www.plantgdb.org/GmGDB/
SoyPLEX [37] Soybean gene expression resource http://www.plexdb.org/plex.php?database = Soybean