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Table 2 Data source of SFGD

From: SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways

Name Number Source
Coding gene and annotation 66,207 genes, the items of cDNA, CDS and protein are all 75,778, respectively ftp://ftp.jgi-psf.org/pub/JGI_data/Glycine_max/[6]
Full-length cDNA 37,870 (4708 full, 32,063 forward and 27,927 reverse sequences) http://rsoy.psc.riken.jp/[29]
Consensus sequence 37,593 http://www.affymetrix.com/estore/index.jsp
Consensus sequence annotation 18,872 (including GO term, EC number and description) http://bioinfo.cipf.es/b2gfar/home[47]
Microarray experiment 14 experiments, 245 samples http://www.ncbi.nlm.nih.gov/geo
Deep sequencing data Four experiments, 30 samples http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?
MicroRNA data 229 (precursor and mature sequences) http://bioinformatics.cau.edu.cn/PMRD/[58]
SNP 17 wild and 14 cultivated soybean species [52]