Table 2 Data source of SFGD

Coding gene and annotation

66,207 genes, the items of cDNA, CDS and protein are all 75,778, respectively

ftp://ftp.jgi-psf.org/pub/JGI_data/Glycine_max/[6]

Full-length cDNA

37,870 (4708 full, 32,063 forward and 27,927 reverse sequences)

http://rsoy.psc.riken.jp/[29]

Consensus sequence

37,593

http://www.affymetrix.com/estore/index.jsp

Consensus sequence annotation

18,872 (including GO term, EC number and description)

http://bioinfo.cipf.es/b2gfar/home[47]

Microarray experiment

14 experiments, 245 samples

http://www.ncbi.nlm.nih.gov/geo

Deep sequencing data

Four experiments, 30 samples

http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?

MicroRNA data

229 (precursor and mature sequences)

http://bioinformatics.cau.edu.cn/PMRD/[58]

SNP

17 wild and 14 cultivated soybean species

[52]