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Table 5 Motif significance analysis results of soybean triacylglycerol biosynthesis related genes

From: SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways

Motif Factor Count ZFM P-value Keywords
GTCATTATCGG CATTAT-motif 1 14.1 0 phyA3;Avena sativa
CGCCACGTGTCC ABREBNNAPA 2 10.81 0 napA; storage protein; ABRE; napin; seed
AATTAAA POLASIG2 453 8.42 0 poly A signal
GGACACGTGGC ABRETAEM 3 5.87 0 ABA; ABRE; EMBP-1; seed
ACGTGKC ACGTABREMOTIFA2OSEM 30 5.17 0 ABA; ABRE; motif A; DRE
MCACGTGGC GBOXLERBCS 9 5.17 0 G box; rbcS; tomato; G-box; leaf; shoot
ATTAAT Box 4 664 4.7 0.000001 pal-CMA1;light responsiveness
TCCACGTGGC LREBOXIIPCCHS1 3 4.69 0.000001 Chalcone synthase; CHS; light; Box II; LRE; leaf; shoot
GTATGATGG SORLIP4AT 4 4.63 0.000002 phyA; phytochrome; light
YACGTGGC ABREATCONSENSUS 11 4.38 0.000006 ABA; ABF; bZIP factors
ACGTGGC BOXIIPCCHS 15 4.35 0.000007 Box II; Box 2; CHS; chs; light regulation
CACGTGGC EMBP1TAEM 9 4.24 0.000011 EMBP-1; Em; ABA; ABF; ABRE; bZIP; seed
TGTATATAT SORLREP3AT 43 4.13 0.000018 phyA; phytochrome; light
CCNNNNNNNNNNNNCCACG UPRMOTIFIIAT 8 3.96 0.000037 UPR; unfolded protein response
TCCACGTGTC SGBFGMGMAUX28 2 3.85 0.000058 Aux28; G box; auxin; bZIP; SGBF-1; SGBF-2
AGATATGATAAAA IBOXLSCMCUCUMISIN 1 3.79 0.000075 Cucumisin; fruit
ACGTGGCA LRENPCABE 8 3.68 0.000117 CAB; cab; cab-E; CABE; light; leaf; shoot
CACGTGG IRO2OS 16 3.55 0.00019 root; shoot; Fe; iron
CCACGTGG ABREZMRAB28 8 3.54 0.000201 Freezing tolerance; seed; shoot; CBF2
ACGTGTC GADOWNAT 15 3.35 0.000404 Ga; seed; germination
GCCACGTGGC ACGTROOT1 2 3.12 0.000898 Root; ACGT; G box; G-box; ABRE motif; bZIP binding enhancement
ACGTCA HEXMOTIFTAH3H4 33 2.83 0.002325 Leucine zipper motif; meristem; OBF1; bZIP; lip19; LIP1
TGACGT TGACGTVMAMY 33 2.83 0.002325 Alpha-Amylase; cotyledon; seed germination; seed
CACGTG CACGTGMOTIF 44 2.83 0.002359 G box; G-box; rbcs; chs; ACGT element; adh; Bz-2; R-motif; STR;GT-1; GBF; elicitor; bZIP; napin; strictosidine synthase; cell
TGTAATAATATATTTATATT Unnamed__5 5 2.77 0.002822 SEF1 factor binding site;seeds
AATTATTTTTTATT AT1-motif 4 2.5 0.006162 Light responsive element
CCACGTGGCC CPRFPCCHS 1 2.48 0.006584 BoxII; CPRF; bZIP; leaf; shoot; CHS; ACE; light; bZIP
CCWWWWWWWWGG CARGNCAT 16 2.45 0.007059 MADS; AGAMOUS; AGL; embryo
RYACGTGGYR ABREATRD22 5 2.34 0.009586 ABA; responsive element; ABRE; rd22; RD22; dehydration; shoot
  1. Note: ZFM (Z-score for motif) and P-value are described in ‘Cis-element significant analysis’ section(job ID:job2014Mar4201558, produced by inputting genes appearing in Table 4).