Skip to main content

Table 5 Motif significance analysis results of soybean triacylglycerol biosynthesis related genes

From: SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways

Motif

Factor

Count

ZFM

P-value

Keywords

GTCATTATCGG

CATTAT-motif

1

14.1

0

phyA3;Avena sativa

CGCCACGTGTCC

ABREBNNAPA

2

10.81

0

napA; storage protein; ABRE; napin; seed

AATTAAA

POLASIG2

453

8.42

0

poly A signal

GGACACGTGGC

ABRETAEM

3

5.87

0

ABA; ABRE; EMBP-1; seed

ACGTGKC

ACGTABREMOTIFA2OSEM

30

5.17

0

ABA; ABRE; motif A; DRE

MCACGTGGC

GBOXLERBCS

9

5.17

0

G box; rbcS; tomato; G-box; leaf; shoot

ATTAAT

Box 4

664

4.7

0.000001

pal-CMA1;light responsiveness

TCCACGTGGC

LREBOXIIPCCHS1

3

4.69

0.000001

Chalcone synthase; CHS; light; Box II; LRE; leaf; shoot

GTATGATGG

SORLIP4AT

4

4.63

0.000002

phyA; phytochrome; light

YACGTGGC

ABREATCONSENSUS

11

4.38

0.000006

ABA; ABF; bZIP factors

ACGTGGC

BOXIIPCCHS

15

4.35

0.000007

Box II; Box 2; CHS; chs; light regulation

CACGTGGC

EMBP1TAEM

9

4.24

0.000011

EMBP-1; Em; ABA; ABF; ABRE; bZIP; seed

TGTATATAT

SORLREP3AT

43

4.13

0.000018

phyA; phytochrome; light

CCNNNNNNNNNNNNCCACG

UPRMOTIFIIAT

8

3.96

0.000037

UPR; unfolded protein response

TCCACGTGTC

SGBFGMGMAUX28

2

3.85

0.000058

Aux28; G box; auxin; bZIP; SGBF-1; SGBF-2

AGATATGATAAAA

IBOXLSCMCUCUMISIN

1

3.79

0.000075

Cucumisin; fruit

ACGTGGCA

LRENPCABE

8

3.68

0.000117

CAB; cab; cab-E; CABE; light; leaf; shoot

CACGTGG

IRO2OS

16

3.55

0.00019

root; shoot; Fe; iron

CCACGTGG

ABREZMRAB28

8

3.54

0.000201

Freezing tolerance; seed; shoot; CBF2

ACGTGTC

GADOWNAT

15

3.35

0.000404

Ga; seed; germination

GCCACGTGGC

ACGTROOT1

2

3.12

0.000898

Root; ACGT; G box; G-box; ABRE motif; bZIP binding enhancement

ACGTCA

HEXMOTIFTAH3H4

33

2.83

0.002325

Leucine zipper motif; meristem; OBF1; bZIP; lip19; LIP1

TGACGT

TGACGTVMAMY

33

2.83

0.002325

Alpha-Amylase; cotyledon; seed germination; seed

CACGTG

CACGTGMOTIF

44

2.83

0.002359

G box; G-box; rbcs; chs; ACGT element; adh; Bz-2; R-motif; STR;GT-1; GBF; elicitor; bZIP; napin; strictosidine synthase; cell

TGTAATAATATATTTATATT

Unnamed__5

5

2.77

0.002822

SEF1 factor binding site;seeds

AATTATTTTTTATT

AT1-motif

4

2.5

0.006162

Light responsive element

CCACGTGGCC

CPRFPCCHS

1

2.48

0.006584

BoxII; CPRF; bZIP; leaf; shoot; CHS; ACE; light; bZIP

CCWWWWWWWWGG

CARGNCAT

16

2.45

0.007059

MADS; AGAMOUS; AGL; embryo

RYACGTGGYR

ABREATRD22

5

2.34

0.009586

ABA; responsive element; ABRE; rd22; RD22; dehydration; shoot

  1. Note: ZFM (Z-score for motif) and P-value are described in ‘Cis-element significant analysis’ section(job ID:job2014Mar4201558, produced by inputting genes appearing in Table 4).