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Table 1 Summary statistics for filtered RAD loci

From: Genome-wide SNPs lead to strong signals of geographic structure and relatedness patterns in the major arbovirus vector, Aedes aegypti

  n T % pol SNP Private P H O H E F IS π N e
Br 17 24273 23.64 8755 2511 0.800 0.265 0.282 0.079 0.0014 23083
Au 17 25019 21.68 8026 1310 0.810 0.234 0.268 0.120 0.0012 19479
In 13 25002 20.87 7757 1423 0.809 0.253 0.270 0.083 0.0012 19230
Vi 15 22333 20.61 6877 1200 0.815 0.243 0.261 0.079 0.0011 18401
All 62 13591 70.72 18147        
  1. n - the number of analyzed individuals from Brazil (Br), Australia (Au), Indonesia (In) and Vietnam (Vi); T - the number of RAD loci; % pol - percentage of polymorphic loci; SNP - total number of SNPs; private - the number of private SNPs; P - average frequency of the more common allele; HO, HE – observed and expected heterozygosity at polymorphic sites; FIS - fixation index across polymorphic sites; π – average nucleotide diversity (calculated across polymorphic and non-variant sites); Ne – lower range effective population size (for μ = 10-8 per site per generation).