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Table 1 The identified VvbZIP genes and their related information

From: Genome-wide analysis and expression profile of the bZIP transcription factor gene family in grapevine (Vitis vinifera)

Gene name Gene ID Group Chr. Locus Chain Protein Length Amount of intron Intron pattern within bZIP domian AtbZIP Ortholog (Syntenic orthologs were denoted by overstriking and italics)
VvbZIP01 VIT_01s0011g03230 J 1 2941266 2946275 + 453 10 b 46, 20, 45, 26, 65, 21, 57, 47, 22, 50
VvbZIP02 VIT_01s0010g00930 C 1 16444033 16444682 - 195 0 h 42, 58, 48, 43, 3, 8, 70, 2, 44, 53, 7, 11, 41, 5, 68, 6, 16, 4
VvbZIP03 VIT_02s0025g01020 D 2 989255 996186 + 398 10 a 55( GBF3 ), 54( GBF2 ), 16, 68, 41
VvbZIP04 VIT_02s0012g02250 D 2 9137736 9153313 - 413 11 a 55, 54, 16, 68, 41, 44, 42, 43, 58, 3, 70, 8, 48
VvbZIP05 VIT_03s0038g00860 F 3 689247 693308 + 676 5 c 29,30, 18, 52, 69, 51, 59, 31, 33, 61, 34, 74
VvbZIP06 VIT_03s0038g02420 I 3 1679507 1683223 + 271 1 h 23, 19, 24
VvbZIP07 VIT_03s0038g04450 C 3 3227416 3228660 - 157 0 h 44, 11, 2, 53, 48, 3, 42, 43, 58, 8, 1, 6, 7, 5, 68, 70
VvbZIP08 VIT_03s0063g00310 A 3 3887073 3890514 - 409 4 a 37( ABF3 ), 36, 38( ABF4 / AREB2 ), 35( ABF1 ), 15, 66, 12, 67, 39, 14, 13, 40
VvbZIP09 VIT_04s0008g02750 B 4 2284121 2287115 - 349 5 d 9, 63, 10, 2, 53, 42, 25, 44, 58, 3, 48, 68, 11
VvbZIP10 VIT_04s0008g05210 G 4 4716191 4719252 + 169 3 f 56( HY5 ), 64
VvbZIP11 VIT_04s0069g01150 A 4 9841491 9842587 + 57 1 a 66, 12, 37, 36, 35, 38, 39
VvbZIP12 VIT_04s0023g01360 D 4 17832626 17863952 + 364 10 a 41, 16, 68, 55, 54, 42, 70, 3, 58, 43, 48, 8, 44, 18
VvbZIP13 VIT_04s0023g02430 C 4 18983616 18984767 + 249 0 h 44, 11, 2, 53, 48, 42, 58, 3, 43, 8, 7, 6, 1, 5
VvbZIP14 VIT_05s0077g01140 C 5 878161 879142 - 154 0 h 53, 2, 44, 11, 58, 3, 5, 48, 7, 1
VvbZIP15 VIT_05s0020g01090 G 5 2860048 2863747 + 210 3 h 64( HYH ), 56
VvbZIP16 VIT_05s0102g01120 F 5 23226450 23231749 - 425 3 c 69, 59, 18, 52, 51, 29, 30, 61, 33, 31, 34, 74
VvbZIP17 VIT_06s0004g08070 F 6 8835674 8841051 - 342 3 c 18,52, 59, 69, 51, 29, 30, 33, 61, 31, 74, 34
VvbZIP18 VIT_06s0009g01790 A 6 13809459 13815625 - 248 2 a 66, 12, 35, 38, 36, 67, 39, 40, 14, 13, 37, 15
VvbZIP19 VIT_06s0080g00340 A 6 20262007 20263157 + 324 2 a 67( DPBF2 ), 39, 66, 12, 35, 36, 38, 15, 37, 40
VvbZIP20 VIT_06s0080g00360 J 6 20304714 20311349 - 500 10 g 21, 65, 45, 20, 26, 46, 22, 50, 47, 57
VvbZIP21 VIT_07s0141g00170 B 7 116657 126811 - 452 5 d 25, 10, 63, 9
VvbZIP22 VIT_07s0005g01450 C 7 3987031 3988120 + 145 0 h 53, 44, 2, 11, 42, 3, 6, 48, 7, 58, 43, 8, 16, 1, 68
VvbZIP23 VIT_07s0031g01320 J 7 17404970 17410595 + 349 7 b 47, 57, 50. 22, 20, 45, 26, 21, 46, 65
VvbZIP24 VIT_08s0040g00870 H 8 11857207 11860728 - 819 1 h 17, 28, 49
VvbZIP25 VIT_08s0007g03420 A 8 17372100 17378057 - 400 0 a 39( ABI5 ), 35, 67, 66, 38, 37, 36, 12, 13, 15, 40, 14
VvbZIP26 VIT_08s0007g03640 UC 8 17579864 17586189 + 496 5 a 62
VvbZIP27 VIT_08s0007g05170 J 8 19088004 19098613 - 451 10 b 45, 20, 26, 46, 21, 65, 57, 50, 22, 47
VvbZIP28 VIT_08s0007g06160 J 8 19963578 19968190 - 491 10 b 65, 21, 45, 20, 26, 46, 22, 57, 50, 47
VvbZIP29 VIT_12s0028g02590 E 12 3366293 3367561 - 295 3 e 61, 34, 51, 69, 18, 52, 59, 30, 29, 72, 33, 31
VvbZIP30 VIT_12s0055g00420 A 12 13276799 13300251 + 299 3 a 13, 40, 12, 66, 67, 35, 37, 38, 36, 39, 14
VvbZIP31 VIT_12s0034g00110 A 12 15485471 15491224 + 99 3 a 66, 12, 37, 36, 35, 38, 39
VvbZIP32 VIT_12s0035g00620 E 12 20038502 20045379 + 374 3 e 61, 34, 69, 59, 18, 51, 29, 52, 30
VvbZIP33 VIT_13s0067g02900 F 13 1562503 1569804 + 359 3 c 18, 52, 59, 69, 51, 29, 30, 33, 61, 31, 34, 74, 72
VvbZIP34 VIT_13s0175g00120 A 13 15049338 15072969 + 325 2 a 66, 12, 35, 67, 38, 37, 36, 39, 15, 14
VvbZIP35 VIT_13s0084g00660 J 13 19780668 19805654 - 469 10 b 45, 26, 20, 46, 21, 65, 57, 22, 50, 47
VvbZIP36 VIT_13s0158g00380 I 13 21283084 21284766 - 286 1 h 23, 19, 24
VvbZIP37 VIT_14s0060g01210 C 14 959578 961198 - 145 0 h 53, 11, 2, 44, 1, 48, 58, 3, 8, 7, 42, 43, 70
VvbZIP38 VIT_14s0030g02200 B 14 7402807 7408597 + 423 5 d 63. 10. 25. 9
VvbZIP39 VIT_14s0083g00700 C 14 22839619 22840360 - 198 0 h 42,43, 58, 3,48, 8, 70, 44, 2, 53, 6, 11, 41, 7, 5, 68
VvbZIP40 VIT_15s0046g01440 D 15 18416554 18423462 - 430 11 a 55( GBF3 ), 54( GBF2 ), 16, 68, 41, 3, 42, 43, 70, 58
VvbZIP41 VIT_18s0122g00500 UC 18 420616 423564 + 322 2 f 60
VvbZIP42 VIT_18s0001g04470 J 18 3861987 3867762 - 363 7 b 57, 47, 50, 22, 26, 20, 65, 45, 21, 46
VvbZIP43 VIT_18s0001g04500 A 18 3875315 3878509 + 311 2 a 12, 66, 35, 36, 39, 38, 37, 14, 15, 67, 40, 13
VvbZIP44 VIT_18s0001g08710 C 18 7185268 7185664 - 81 0 h 7, 6, 4, 5, 2, 3
VvbZIP45 VIT_18s0001g10450 A 18 8761978 8769742 - 447 3 a 36( ABF2 / AREB1 ), 35, 37( ABF3 ), 38, 66, 12, 39, 15, 67
VvbZIP46 VIT_18s0001g12120 D 18 10309606 10313842 + 396 10 a 41, 16, 68, 55, 54, 43, 58, 42, 3, 48, 70, 8
VvbZIP47 VIT_18s0001g13040 C 18 11138196 11139020 + 154 0 h 44, 11, 2, 53, 48, 3, 42, 58, 43, 1, 7, 6, 8, 5
VvbZIP48 VIT_18s0001g13740 F 18 11745490 11746413 - 187 3 c 30, 29, 51, 69, 52, 18, 59, 33, 31, 61, 34
VvbZIP49 VIT_18s0001g14890 A 18 12936974 12937903 - 214 2 a 14( FD ), 66, 12, 37, 36, 39, 38, 35, 27
VvbZIP50 VIT_18s0076g00330 F 18 16209694 16218061 + 350 3 c 51, 18, 69, 59, 52, 29, 30, 31, 61, 33, 74, 34
VvbZIP51 VIT_18s0072g00470 A 18 19680318 19687522 + 275 3 a 13, 40, 66, 12, 39, 36
VvbZIP52 VIT_19s0014g01780 E 19 1945207 1947498 - 309 3 e 61, 34, 51, 18, 52, 69, 59, 30, 29, 72, 33, 31
VvbZIP53 VIT_19s0015g01020 A 19 9101591 9112651 - 251 2 g 36, 12
VvbZIP54 VIT_18s0001g03010 E 18_random 3068050 3070292 - 272 3 e 61, 34, 69, 51, 59
VvbZIP55 VIT_00s0541g00020 C Un 31593865 31594595 - 194 0 h 6, 5, 7, 44, 42, 58, 2, 3, 11, 48, 53, 43, 70, 8, 1, 4
  1. Note: AtbZIP Orthologs were identified by local BLAST search with E-value < 1E-10 and the identification of syntenic orthologs (highlight with italics) was performed by using the software MCScanX.