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Table 1 The identified VvbZIP genes and their related information

From: Genome-wide analysis and expression profile of the bZIP transcription factor gene family in grapevine (Vitis vinifera)

Gene name

Gene ID

Group

Chr.

Locus

Chain

Protein Length

Amount of intron

Intron pattern within bZIP domian

AtbZIP Ortholog (Syntenic orthologs were denoted by overstriking and italics)

VvbZIP01

VIT_01s0011g03230

J

1

2941266

2946275

+

453

10

b

46, 20, 45, 26, 65, 21, 57, 47, 22, 50

VvbZIP02

VIT_01s0010g00930

C

1

16444033

16444682

-

195

0

h

42, 58, 48, 43, 3, 8, 70, 2, 44, 53, 7, 11, 41, 5, 68, 6, 16, 4

VvbZIP03

VIT_02s0025g01020

D

2

989255

996186

+

398

10

a

55( GBF3 ), 54( GBF2 ), 16, 68, 41

VvbZIP04

VIT_02s0012g02250

D

2

9137736

9153313

-

413

11

a

55, 54, 16, 68, 41, 44, 42, 43, 58, 3, 70, 8, 48

VvbZIP05

VIT_03s0038g00860

F

3

689247

693308

+

676

5

c

29,30, 18, 52, 69, 51, 59, 31, 33, 61, 34, 74

VvbZIP06

VIT_03s0038g02420

I

3

1679507

1683223

+

271

1

h

23, 19, 24

VvbZIP07

VIT_03s0038g04450

C

3

3227416

3228660

-

157

0

h

44, 11, 2, 53, 48, 3, 42, 43, 58, 8, 1, 6, 7, 5, 68, 70

VvbZIP08

VIT_03s0063g00310

A

3

3887073

3890514

-

409

4

a

37( ABF3 ), 36, 38( ABF4 / AREB2 ), 35( ABF1 ), 15, 66, 12, 67, 39, 14, 13, 40

VvbZIP09

VIT_04s0008g02750

B

4

2284121

2287115

-

349

5

d

9, 63, 10, 2, 53, 42, 25, 44, 58, 3, 48, 68, 11

VvbZIP10

VIT_04s0008g05210

G

4

4716191

4719252

+

169

3

f

56( HY5 ), 64

VvbZIP11

VIT_04s0069g01150

A

4

9841491

9842587

+

57

1

a

66, 12, 37, 36, 35, 38, 39

VvbZIP12

VIT_04s0023g01360

D

4

17832626

17863952

+

364

10

a

41, 16, 68, 55, 54, 42, 70, 3, 58, 43, 48, 8, 44, 18

VvbZIP13

VIT_04s0023g02430

C

4

18983616

18984767

+

249

0

h

44, 11, 2, 53, 48, 42, 58, 3, 43, 8, 7, 6, 1, 5

VvbZIP14

VIT_05s0077g01140

C

5

878161

879142

-

154

0

h

53, 2, 44, 11, 58, 3, 5, 48, 7, 1

VvbZIP15

VIT_05s0020g01090

G

5

2860048

2863747

+

210

3

h

64( HYH ), 56

VvbZIP16

VIT_05s0102g01120

F

5

23226450

23231749

-

425

3

c

69, 59, 18, 52, 51, 29, 30, 61, 33, 31, 34, 74

VvbZIP17

VIT_06s0004g08070

F

6

8835674

8841051

-

342

3

c

18,52, 59, 69, 51, 29, 30, 33, 61, 31, 74, 34

VvbZIP18

VIT_06s0009g01790

A

6

13809459

13815625

-

248

2

a

66, 12, 35, 38, 36, 67, 39, 40, 14, 13, 37, 15

VvbZIP19

VIT_06s0080g00340

A

6

20262007

20263157

+

324

2

a

67( DPBF2 ), 39, 66, 12, 35, 36, 38, 15, 37, 40

VvbZIP20

VIT_06s0080g00360

J

6

20304714

20311349

-

500

10

g

21, 65, 45, 20, 26, 46, 22, 50, 47, 57

VvbZIP21

VIT_07s0141g00170

B

7

116657

126811

-

452

5

d

25, 10, 63, 9

VvbZIP22

VIT_07s0005g01450

C

7

3987031

3988120

+

145

0

h

53, 44, 2, 11, 42, 3, 6, 48, 7, 58, 43, 8, 16, 1, 68

VvbZIP23

VIT_07s0031g01320

J

7

17404970

17410595

+

349

7

b

47, 57, 50. 22, 20, 45, 26, 21, 46, 65

VvbZIP24

VIT_08s0040g00870

H

8

11857207

11860728

-

819

1

h

17, 28, 49

VvbZIP25

VIT_08s0007g03420

A

8

17372100

17378057

-

400

0

a

39( ABI5 ), 35, 67, 66, 38, 37, 36, 12, 13, 15, 40, 14

VvbZIP26

VIT_08s0007g03640

UC

8

17579864

17586189

+

496

5

a

62

VvbZIP27

VIT_08s0007g05170

J

8

19088004

19098613

-

451

10

b

45, 20, 26, 46, 21, 65, 57, 50, 22, 47

VvbZIP28

VIT_08s0007g06160

J

8

19963578

19968190

-

491

10

b

65, 21, 45, 20, 26, 46, 22, 57, 50, 47

VvbZIP29

VIT_12s0028g02590

E

12

3366293

3367561

-

295

3

e

61, 34, 51, 69, 18, 52, 59, 30, 29, 72, 33, 31

VvbZIP30

VIT_12s0055g00420

A

12

13276799

13300251

+

299

3

a

13, 40, 12, 66, 67, 35, 37, 38, 36, 39, 14

VvbZIP31

VIT_12s0034g00110

A

12

15485471

15491224

+

99

3

a

66, 12, 37, 36, 35, 38, 39

VvbZIP32

VIT_12s0035g00620

E

12

20038502

20045379

+

374

3

e

61, 34, 69, 59, 18, 51, 29, 52, 30

VvbZIP33

VIT_13s0067g02900

F

13

1562503

1569804

+

359

3

c

18, 52, 59, 69, 51, 29, 30, 33, 61, 31, 34, 74, 72

VvbZIP34

VIT_13s0175g00120

A

13

15049338

15072969

+

325

2

a

66, 12, 35, 67, 38, 37, 36, 39, 15, 14

VvbZIP35

VIT_13s0084g00660

J

13

19780668

19805654

-

469

10

b

45, 26, 20, 46, 21, 65, 57, 22, 50, 47

VvbZIP36

VIT_13s0158g00380

I

13

21283084

21284766

-

286

1

h

23, 19, 24

VvbZIP37

VIT_14s0060g01210

C

14

959578

961198

-

145

0

h

53, 11, 2, 44, 1, 48, 58, 3, 8, 7, 42, 43, 70

VvbZIP38

VIT_14s0030g02200

B

14

7402807

7408597

+

423

5

d

63. 10. 25. 9

VvbZIP39

VIT_14s0083g00700

C

14

22839619

22840360

-

198

0

h

42,43, 58, 3,48, 8, 70, 44, 2, 53, 6, 11, 41, 7, 5, 68

VvbZIP40

VIT_15s0046g01440

D

15

18416554

18423462

-

430

11

a

55( GBF3 ), 54( GBF2 ), 16, 68, 41, 3, 42, 43, 70, 58

VvbZIP41

VIT_18s0122g00500

UC

18

420616

423564

+

322

2

f

60

VvbZIP42

VIT_18s0001g04470

J

18

3861987

3867762

-

363

7

b

57, 47, 50, 22, 26, 20, 65, 45, 21, 46

VvbZIP43

VIT_18s0001g04500

A

18

3875315

3878509

+

311

2

a

12, 66, 35, 36, 39, 38, 37, 14, 15, 67, 40, 13

VvbZIP44

VIT_18s0001g08710

C

18

7185268

7185664

-

81

0

h

7, 6, 4, 5, 2, 3

VvbZIP45

VIT_18s0001g10450

A

18

8761978

8769742

-

447

3

a

36( ABF2 / AREB1 ), 35, 37( ABF3 ), 38, 66, 12, 39, 15, 67

VvbZIP46

VIT_18s0001g12120

D

18

10309606

10313842

+

396

10

a

41, 16, 68, 55, 54, 43, 58, 42, 3, 48, 70, 8

VvbZIP47

VIT_18s0001g13040

C

18

11138196

11139020

+

154

0

h

44, 11, 2, 53, 48, 3, 42, 58, 43, 1, 7, 6, 8, 5

VvbZIP48

VIT_18s0001g13740

F

18

11745490

11746413

-

187

3

c

30, 29, 51, 69, 52, 18, 59, 33, 31, 61, 34

VvbZIP49

VIT_18s0001g14890

A

18

12936974

12937903

-

214

2

a

14( FD ), 66, 12, 37, 36, 39, 38, 35, 27

VvbZIP50

VIT_18s0076g00330

F

18

16209694

16218061

+

350

3

c

51, 18, 69, 59, 52, 29, 30, 31, 61, 33, 74, 34

VvbZIP51

VIT_18s0072g00470

A

18

19680318

19687522

+

275

3

a

13, 40, 66, 12, 39, 36

VvbZIP52

VIT_19s0014g01780

E

19

1945207

1947498

-

309

3

e

61, 34, 51, 18, 52, 69, 59, 30, 29, 72, 33, 31

VvbZIP53

VIT_19s0015g01020

A

19

9101591

9112651

-

251

2

g

36, 12

VvbZIP54

VIT_18s0001g03010

E

18_random

3068050

3070292

-

272

3

e

61, 34, 69, 51, 59

VvbZIP55

VIT_00s0541g00020

C

Un

31593865

31594595

-

194

0

h

6, 5, 7, 44, 42, 58, 2, 3, 11, 48, 53, 43, 70, 8, 1, 4

  1. Note: AtbZIP Orthologs were identified by local BLAST search with E-value < 1E-10 and the identification of syntenic orthologs (highlight with italics) was performed by using the software MCScanX.
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