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Table 1 Read statistics in five sRNA libraries

From: Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)

Tissue

Redundant

Unique

Clean reada

Wheat genome-matched readb

Clean reada

Wheat genome-matched readb

Seedlingsc

13,931,738

6,344,991 (45.54%)

3,670,844

1,947,422 (53.05%)

Flag leavesd

13,595,341

7,499,877 (55.17%)

3,089,194

1,823,512 (59.03%)

5-d seeds

14,569,411

8,436,803 (57.91%)

3,214,958

1,619,493 (50.37%)

10-d seeds

14,181,881

8,203,547 (57.85%)

3,857,235

2,114,232 (54.81%)

20-d seeds

18,311,762

10,833,109 (59.16%)

6,040,094

3,515,176 (58.20%)

Total

74,590,133

41,352,236 (55.39%)

19,872,325

11,028,735 (55.45%)

  1. a 18 nt to 30 nt in length.
  2. b Referring to clean reads perfectly matched with wheat genome shotgun-sequence assemblies (http://mips.helmholtz-muenchen.de/plant/wheat/uk454survey/index.jsp).
  3. c Seedlings after vernalisation in the field (at five-leaf stage).
  4. d From heading wheat plants.
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BMC Genomics

ISSN: 1471-2164

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