Table 3 Detail of the 110 probe sets identified for processing quality showing at least 10-fold differential expression between good and poor quality wheat varieties in at least one of the three seed developmental stages i.e. 7, 14, and 28 days after anthesis (DAA)
Probe set ID | Putative gene function | 7 DAA | 14 DAA | 28 DAA | Quality | Seed development | Quality x seed development | |||
|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Fold change | Regulation | Fold change | Regulation | Fold change | Regulation | Â | Â | Â |
Ta.1345.2.S1_x_at | 14 kDa proline-rich protein DC2.15 [Triticum urartu] | 12.1 | Down | 1.1 | Down | 1.0 | Up | + | + | + |
Ta.1345.1.S1_x_at | 14 kDa proline-rich protein DC2.15 [Triticum urartu] | 11.1 | Down | 1.0 | Up | 1.1 | Down | + | + | + |
TaAffx.128648.2.A1_at | 2′-deoxymugineic-acid 2′-dioxygenase [Triticum urartu] | 15.3 | Up | 4.3 | Up | 1.3 | Up | + | + | - |
Ta.24114.10.S1_x_at | Alpha/beta-gliadin [Triticum aestivum] | 54.1 | Up | 1.1 | Up | 1.1 | Up | + | + | + |
Ta.10028.1.S1_at | Alpha-amylase/subtilisin inhibitor [Triticum urartu] | 30.9 | Up | 5.3 | Up | 1.1 | Up | + | + | - |
Ta.27778.4.S1_x_at | Alpha-gliadin [Triticum aestivum] | 284.7 | Up | 1.3 | Up | 1.2 | Down | + | + | + |
Ta.15268.1.S1_x_at | Alpha-gliadin [Triticum aestivum] | 110.3 | Up | 1.1 | Up | 1.1 | Up | + | + | + |
Ta.27778.2.S1_x_at | Alpha-gliadin [Triticum aestivum] | 209.5 | Up | 1.5 | Up | 1.8 | Down | + | + | + |
Ta.24114.1.S1_x_at | Alpha-gliadin protein [Triticum dicoccoides] | 171.4 | Up | 1.0 | Up | 1.2 | Down | + | + | + |
Ta.21787.1.S1_at | Aspartic proteinase nepenthesin-1 [Triticum urartu] | 12.5 | Down | 1.0 | Down | 1.1 | Up | + | + | + |
Ta.27777.1.S2_s_at | Avenin-like b1 | 122.6 | Up | 1.1 | Up | 1.0 | Up | + | + | + |
Ta.27777.1.S2_at | Avenin-like b1 | 57.6 | Up | 1.0 | Up | 1.3 | Up | + | + | + |
Ta.27712.1.S1_at | Avenin-like protein [Triticum aestivum] | 86.6 | Up | 1.1 | Up | 1.3 | Up | + | + | + |
Ta.9799.1.S1_at | Avenin-like protein [Triticum aestivum] | 45.0 | Up | 2.7 | Up | 2.9 | Up | + | + | - |
Ta.27780.1.S1_x_at | Beta-amylase [Aegilops tauschii] | 58.6 | Up | 1.2 | Down | 1.1 | Down | + | + | + |
Ta.27780.2.A1_a_at | Beta-amylase [Triticum urartu] | 156.1 | Up | 1.0 | Down | 1.2 | Down | + | + | + |
Ta.27780.2.A1_x_at | Beta-amylase [Triticum urartu] | 122.4 | Up | 1.0 | Up | 1.2 | Down | + | + | + |
Ta.27780.3.S1_x_at | Beta-amylase, partial [Triticum aestivum] | 72.0 | Up | 1.0 | Down | 1.1 | Up | + | + | + |
Ta.9809.2.S1_at | Beta-fructofuranosidase, isoenzyme 4 [Aegilops tauschii] | 12.6 | Up | 1.7 | Up | 1.1 | Up | + | + | - |
Ta.27445.1.S1_at | Cell division protease ftsH-like protein, chloroplastic [Aegilops tauschii] | 9.2 | Down | 13.4 | Down | 28.6 | Down | + | - | - |
Ta.6984.1.A1_at | Chromodomain-helicase-DNA-binding protein 4 [Triticum urartu] | 58.0 | Down | 7.0 | Down | 16.9 | Down | + | + | - |
Ta.14507.2.S1_at | Cytosolic Fe-S cluster assembly factor NUBP1-like protein [Triticum urartu] | 29.9 | Down | 3.6 | Down | 7.6 | Down | + | - | - |
TaAffx.108987.1.S1_at | DNA-directed RNA polymerase subunit beta [Triticum urartu] | 2.0 | Down | 5.7 | Up | 15.2 | Up | + | + | + |
Ta.30782.4.S1_at | Gamma gliadin [Triticum aestivum] | 98.0 | Up | 1.0 | Up | 1.0 | Up | + | + | + |
Ta.28792.1.S1_x_at | Gamma-gliadin [Triticum aestivum] | 146.9 | Up | 1.0 | Up | 2.2 | Up | + | + | + |
Ta.24114.8.S1_x_at | Gamma-gliadin [Triticum aestivum] | 194.8 | Up | 1.1 | Up | 1.8 | Up | + | + | + |
Ta.6175.1.S1_at | Gamma-gliadin [Triticum aestivum] | 105.9 | Up | 1.2 | Up | 1.5 | Down | + | + | + |
Ta.6175.1.S1_x_at | Gamma-gliadin [Triticum aestivum] | 80.9 | Up | 1.4 | Up | 1.2 | Down | + | + | + |
Ta.30782.2.S1_x_at | Gamma-gliadin [Triticum aestivum] | 51.3 | Up | 1.2 | Up | 1.3 | Up | + | + | + |
Ta.24114.8.S1_at | Gamma-gliadin [Triticum aestivum] | 168.9 | Up | 1.0 | Up | 1.9 | Up | + | + | + |
Ta.30782.2.S1_a_at | Gamma-gliadin [Triticum aestivum] | 28.2 | Up | 1.2 | Up | 1.5 | Up | + | + | - |
Ta.160.3.S1_x_at | Gamma-gliadin, partial [Triticum aestivum] | 13.6 | Up | 3.6 | Up | 3.5 | Up | + | + | - |
Ta.160.2.S1_x_at | Gamma-gliadin, partial [Triticum aestivum] | 13.3 | Up | 3.8 | Up | 3.5 | Up | + | + | - |
Ta.160.1.S1_x_at | Gamma-gliadin, partial [Triticum aestivum] | 14.6 | Up | 1.8 | Up | 2.7 | Up | + | + | - |
Ta.7430.1.S1_at | GATA transcription factor 17 [Triticum urartu] | 11.4 | Up | 5.3 | Up | 6.4 | Up | + | - | - |
TaAffx.27375.1.S1_at | General transcription factor IIF subunit 2 [Triticum urartu] | 2.4 | Down | 5.1 | Up | 11.4 | Up | + | + | + |
Ta.23142.11.S1_x_at | Gliadin/avenin-like seed protein [Triticum aestivum] | 124.1 | Up | 1.1 | Up | 1.1 | Down | + | + | + |
Ta.23142.4.S1_s_at | Gliadin/avenin-like seed protein [Triticum aestivum] | 175.9 | Up | 1.0 | Up | 1.0 | Up | + | + | + |
Ta.2415.2.S1_a_at | Gliadin/avenin-like seed protein [Triticum aestivum] | 17.4 | Up | 2.1 | Up | 1.1 | Down | + | - | - |
Ta.24114.7.A1_at | Granule-bound starch synthase I [Triticum aestivum] | 6.7 | Down | 26.9 | Down | 92.8 | Down | + | + | - |
Ta.5129.2.A1_a_at | Heat stress transcription factor A-9 [Aegilops tauschii] | 7.5 | Down | 5.4 | Down | 25.1 | Down | + | + | - |
Ta.24963.1.S1_x_at | HMW-glutenin subunit 1By9, truncated [Triticum aestivum subsp. tibeticum] | 60.4 | Up | 1.1 | Down | 1.1 | Up | + | + | + |
Ta.24298.1.S1_x_at | HMW-glutenin subunit Dx5 [Triticum aestivum] | 56.7 | Up | 1.1 | Down | 1.0 | Up | + | + | + |
Ta.25839.1.A1_a_at | Hypothetical protein F775_04832 [Aegilops tauschii] | 26.6 | Up | 4.6 | Up | 24.9 | Up | + | + | - |
Ta.7509.3.S1_at | Hypothetical protein F775_05928 [Aegilops tauschii] | 14.0 | Down | 26.9 | Down | 22.0 | Down | + | - | - |
Ta.24550.1.S1_s_at | Hypothetical protein F775_05934 [Aegilops tauschii] | 16.7 | Up | 1.4 | Down | 1.2 | Down | + | + | + |
Ta.28759.1.A1_at | Hypothetical protein F775_09062 [Aegilops tauschii] | 5.7 | Up | 2.7 | Up | 14.7 | Up | + | - | - |
Ta.19222.1.S1_at | Hypothetical protein F775_11525 [Aegilops tauschii] | 29.8 | Up | 6.9 | Up | 5.3 | Up | + | + | - |
Ta.28744.1.S1_at | Hypothetical protein F775_23873 [Aegilops tauschii] | 11.3 | Up | 11.0 | Up | 35.2 | Up | + | + | - |
Ta.23681.1.S1_a_at | Hypothetical protein F775_24401 [Aegilops tauschii] | 13.9 | Up | 8.6 | Up | 19.3 | Up | + | + | - |
Ta.9888.1.A1_at | Hypothetical protein F775_26991 [Aegilops tauschii] | 12.7 | Up | 1.1 | Up | 1.1 | Up | + | + | + |
Ta.8883.2.S1_at | Hypothetical protein F775_27368 [Aegilops tauschii] | 12.0 | Down | 7.9 | Down | 9.2 | Down | + | - | - |
Ta.14050.1.S1_at | Hypothetical protein F775_27373 [Aegilops tauschii] | 2.8 | Up | 3.7 | Up | 37.3 | Up | + | - | - |
Ta.22853.1.S1_at | Hypothetical protein F775_27669 [Aegilops tauschii] | 10.1 | Down | 2.8 | Down | 1.1 | Up | + | + | + |
Ta.12328.2.A1_at | Hypothetical protein F775_32343 [Aegilops tauschii] | 1.1 | Down | 2.3 | Up | 10.1 | Up | + | + | - |
Ta.8621.1.S1_at | Hypothetical protein F775_43701 [Aegilops tauschii] | 10.8 | Down | 1.2 | Up | 1.1 | Up | + | + | + |
Ta.24736.1.S1_at | Hypothetical protein F775_43830 [Aegilops tauschii] | 550.2 | Up | 31.2 | Up | 8.0 | Up | + | + | - |
Ta.24218.1.S1_at | Hypothetical protein TRIUR3_02605 [Triticum urartu] | 11.6 | Up | 6.9 | Up | 3.6 | Up | + | - | - |
Ta.5278.1.S1_at | Hypothetical protein TRIUR3_04715 [Triticum urartu] | 10.1 | Down | 4.2 | Down | 3.0 | Down | + | - | - |
Ta.14446.1.A1_at | Hypothetical protein TRIUR3_05569 [Triticum urartu] | 14.8 | Down | 13.2 | Down | 9.9 | Down | + | - | - |
Ta.5243.2.S1_a_at | Hypothetical protein TRIUR3_06223 [Triticum urartu] | 2.3 | Down | 4.9 | Down | 19.0 | Down | + | + | - |
Ta.2025.1.S1_at | Hypothetical protein TRIUR3_06809 [Triticum urartu] | 1.6 | Down | 86.3 | Down | 1727.5 | Down | + | + | + |
Ta.23013.3.S1_s_at | Hypothetical protein TRIUR3_09069 [Triticum urartu] | 31.5 | Down | 1.4 | Down | 1.4 | Down | + | + | + |
Ta.6018.1.S1_x_at | Hypothetical protein TRIUR3_12951 [Triticum urartu] | 10.7 | Up | 1.1 | Up | 1.0 | Up | + | + | + |
Ta.24550.2.S1_s_at | Hypothetical protein TRIUR3_13108 [Triticum urartu] | 28.6 | Up | 1.4 | Down | 1.2 | Down | + | + | + |
Ta.24550.2.S1_at | Hypothetical protein TRIUR3_13108 [Triticum urartu] | 21.1 | Up | 1.5 | Down | 1.1 | Down | + | + | + |
TaAffx.80038.1.S1_at | Hypothetical protein TRIUR3_13205 [Triticum urartu] | 11.9 | Down | 1.4 | Up | 1.1 | Up | + | + | + |
TaAffx.82110.1.S1_at | Hypothetical protein TRIUR3_18607 [Triticum urartu] | 1.4 | Down | 2.5 | Up | 10.5 | Up | + | + | - |
Ta.7158.1.S1_at | Hypothetical protein TRIUR3_24125 [Triticum urartu] | 108.1 | Up | 6.8 | Up | 4.5 | Up | + | + | - |
Ta.11896.1.A1_s_at | Hypothetical protein TRIUR3_24659 [Triticum urartu] | 24.9 | Up | 7.9 | Up | 3.7 | Up | + | - | - |
TaAffx.80118.1.S1_at | Hypothetical protein TRIUR3_25902 [Triticum urartu] | 20.1 | Down | 5.8 | Down | 32.6 | Down | + | + | - |
Ta.4497.1.S1_at | Hypothetical protein TRIUR3_27348 [Triticum urartu] | 10.3 | Down | 1.2 | Up | 1.1 | Up | + | + | + |
TaAffx.5865.2.A1_at | Hypothetical protein TRIUR3_27593 [Triticum urartu] | 1.4 | Down | 2.9 | Up | 14.2 | Up | + | + | - |
TaAffx.78552.1.S1_at | Hypothetical protein TRIUR3_27901 [Triticum urartu] | 14.7 | Up | 1.9 | Up | 3.4 | Up | + | + | + |
TaAffx.78552.1.S1_x_at | Hypothetical protein TRIUR3_27901 [Triticum urartu] | 11.7 | Up | 1.7 | Up | 2.9 | Up | + | - | - |
Ta.5785.1.S1_at | Hypothetical protein TRIUR3_27988 [Triticum urartu] | 1.1 | Up | 1.1 | Up | 14.3 | Up | + | + | + |
TaAffx.5496.1.S1_at | Hypothetical protein TRIUR3_29836 [Triticum urartu] | 16.7 | Up | 10.6 | Up | 2.9 | Up | + | + | - |
Ta.21106.1.A1_at | Hypothetical protein TRIUR3_30277 [Triticum urartu] | 4.9 | Up | 5.7 | Up | 16.2 | Up | + | + | - |
Ta.14723.1.S1_at | Hypothetical protein TRIUR3_33733 [Triticum urartu] | 1.7 | Down | 3.5 | Up | 11.3 | Up | + | + | + |
Ta.3527.1.S1_at | Hypothetical protein TRIUR3_34067 [Triticum urartu] | 6.2 | Up | 8.1 | Up | 28.3 | Up | + | + | - |
TaAffx.30606.1.S1_at | Katanin p80 WD40 repeat-containing subunit B1-like Protein 1 [Triticum urartu] | 1.2 | Down | 2.3 | Up | 14.0 | Up | + | + | - |
Ta.23142.5.S1_x_at | LMW-glutenin [Triticum aestivum] | 57.8 | Up | 1.0 | Up | 1.3 | Up | + | + | + |
Ta.14625.1.S1_x_at | LMW-glutenin [Triticum aestivum] | 106.0 | Up | 1.1 | Down | 1.2 | Down | + | + | + |
Ta.131.1.S1_at | LMW-glutenin subunit, partial [Triticum aestivum] | 58.9 | Up | 1.1 | Up | 1.2 | Up | + | + | + |
TaAffx.109582.1.S1_s_at | LRR receptor-like serine/threonine-protein kinase FLS2 [Triticum urartu] | 3.7 | Down | 9.2 | Up | 10.3 | Up | + | + | + |
Ta.12643.5.S1_x_at | No significant similarity found | 92.5 | Up | 1.2 | Up | 1.0 | Up | + | + | + |
Ta.7825.1.S1_s_at | No significant similarity found | 1.0 | Up | 13.5 | Up | 1.2 | Up | + | + | + |
TaAffx.104444.1.S1_at | No significant similarity found | 47.5 | Down | 5.4 | Down | 4.4 | Down | + | + | - |
TaAffx.31445.1.S1_at | No significant similarity found | 1.4 | Down | 3.6 | Up | 11.1 | Up | + | + | - |
Ta.19222.1.S1_x_at | No significant similarity found | 14.1 | Up | 3.9 | Up | 3.2 | Up | + | - | - |
TaAffx.91902.1.A1_at | No significant similarity found | 4.2 | Up | 5.5 | Up | 32.6 | Up | + | - | - |
Ta.23896.1.S1_at | Omega gliadin [Triticum aestivum] | 33.1 | Up | 1.4 | Up | 1.5 | Up | + | + | - |
Ta.23366.2.S1_at | Peroxidase 66 [Triticum urartu] | 2.6 | Up | 10.0 | Up | 60.0 | Up | + | + | - |
Ta.23366.2.S1_x_at | Peroxidase 66 [Triticum urartu] | 2.4 | Up | 5.6 | Up | 28.9 | Up | + | + | - |
Ta.4957.1.S1_at | Peroxisomal acyl-coenzyme A oxidase 1 [Triticum urartu] | 26.6 | Down | 3.6 | Down | 7.9 | Down | + | + | - |
Ta.12764.1.A1_at | Peroxisomal multifunctional enzyme type 2 [Aegilops tauschii] | 1.5 | Down | 1.3 | Down | 14.5 | Down | + | + | + |
Ta.14489.1.S1_at | pTACR7 [Triticum aestivum] | 2.4 | Down | 7.6 | Down | 29.0 | Down | + | + | - |
TaAffx.118782.1.A1_at | Putative disease resistance protein RGA4 [Triticum urartu] | 2.8 | Down | 1.7 | Down | 10.7 | Down | + | + | + |
Ta.23352.1.S1_at | Putative serine/threonine-protein kinase-like protein CCR3 [Aegilops tauschii] | 10.8 | Up | 5.8 | Up | 6.1 | Up | + | - | - |
TaAffx.112770.1.S1_x_at | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Triticum urartu] | 2.6 | Down | 6.4 | Up | 12.3 | Up | + | + | + |
TaAffx.112770.1.S1_at | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Triticum urartu] | 1.7 | Down | 5.4 | Up | 10.7 | Up | + | + | + |
TaAffx.27343.2.S1_at | Serine/threonine-protein phosphatase 7 long form-like Protein [Triticum urartu] | 1.3 | Down | 2.1 | Up | 11.5 | Up | + | + | + |
Ta.2434.3.A1_at | S-formylglutathione hydrolase [Aegilops tauschii] | 13.7 | Down | 11.9 | Down | 9.6 | Down | + | - | - |
Ta.1622.2.S1_at | Sugar transporter ERD6-like protein 5 [Aegilops tauschii] | 10.0 | Down | 2.4 | Down | 1.4 | Down | + | + | - |
TaAffx.109268.1.S1_x_at | TaCBF11 [Triticum aestivum] | 1.2 | Down | 2.1 | Up | 10.0 | Up | + | + | + |
Ta.10170.1.S1_at | Trypsin inhibitor CMc [Aegilops tauschii] | 32.9 | Up | 1.2 | Up | 1.7 | Up | + | + | - |
Ta.13439.1.S1_a_at | Trypsin inhibitor-Bowman-Birk type | 84.5 | Up | 2.1 | Up | 3.0 | Up | + | + | - |
TaAffx.6814.1.S1_at | Wall-associated receptor kinase 5 [Aegilops tauschii] | 1.2 | Down | 1.9 | Up | 11.0 | Up | + | + | + |
TaAffx.111195.1.S1_at | Zf-MYND domain-containing protein [Triticum aestivum] | 1.7 | Down | 3.5 | Up | 13.3 | Up | + | + | + |
TaAffx.86295.1.S1_at | Zf-MYND domain-containing protein [Triticum aestivum] | 1.3 | Down | 2.1 | Up | 10.4 | Up | + | + | - |