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Table 8 INDELs in putative acyl lipid genes

From: Identification and characterization of transcript polymorphisms in soybean lines varying in oil composition and content

Soybean line

Jack

FAM94-41

M23

N0304-303-3

R02-6268 F

R05-4256

R05-591

R08-1450

R95-1705

Total

Average

Total INDEL count in annotated genes

16

22

18

21

20

13

10

24

20

45

18.22

INDELs in annotated exons

10

18

14

15

17

11

9

20

14

32

14.22

INDELs in annotated UTRs

7

16

12

13

15

9

8

18

13

28

12.33

INDELs in annotated CDS

3

2

2

2

2

2

1

2

1

4

1.89

INDELs in termination codons

0

0

0

0

0

0

0

0

0

0

0.00

INDELs in splice sites

0

0

0

0

0

0

0

0

0

0

0.00

INDELs in annotated introns

7

6

5

7

4

3

2

5

7

13

5.11

Homozygous INDELs

14

21

15

19

18

11

7

18

18

43

15.67

Heterozygous INDELs

2

1

3

2

2

2

3

6

2

16

2.56

INDELs overlapping with dbSNP

5

2

6

5

2

3

1

4

6

10

3.78