Skip to main content

Table 2 List of the inferred clusters composed of sporadic trans-factors

From: PTRcombiner: mining combinatorial regulation of gene expression from post-transcriptional interaction maps

Class Cluster Trans-factors
Singleton Clust S01 HNRNPD
RBP Clust S02 CAPRIN1, FUS, FXR1, MOV10, TAF15
Singleton Clust S03 HNRNPH
RBP Clust S04 C22ORF28, CAPRIN1, MOV10
Singleton Clust S05 HNRNPC
Singleton Clust S06 HNRNPU
Singleton Clust S07 HNRNPF
Singleton Clust S08 PUM1
miRNA Clust S09 hsa-miR-15a, hsa-miR-15b, hsa-miR-16,
RBP-miRNA Clust S10 PUM2, hsa-miR-130a, hsa-miR-130b,
   hsa-miR-148a, hsa-miR-148b, hsa-miR-19a,
   hsa-miR-19b, hsa-miR-301a, hsa-miR-301b
Singleton Clust S11 HNRNPA2B1
Singleton Clust S12 PABPC1
Singleton Clust S13 U2AF2
miRNA Clust S14 hsa-miR-106b, hsa-miR-17, hsa-miR-20a,
RBP Clust S15 MOV10, PUM2
miRNA Clust S16 hsa-let-7a, hsa-let-7b, hsa-let-7c, hsa-let-7d,
   hsa-let-7e, hsa-let-7f, hsa-let-7g, hsa-let-7i
Singleton Clust S17 DGCR8
Singleton Clust S18 C17ORF85
Singleton Clust S19 TARDBP
RBP Clust S20 FUS, MOV10, TAF15
RBP-miRNA Clust S21 PUM2, hsa-miR-103, hsa-miR-107,
   hsa-miR-183, hsa-miR-221, hsa-miR-222,
   hsa-miR-23b, hsa-miR-25, hsa-miR-27a,
   hsa-miR-27b, hsa-miR-32, hsa-miR-92a,
miRNA Clust S22 hsa-miR-103, hsa-miR-107, hsa-miR-15a,
   hsa-miR-15b, hsa-miR-16, hsa-miR-29a,
   hsa-miR-29b, hsa-miR-29c, hsa-miR-424
Singleton Clust S23 CELF1
Singleton Clust S24 hsa-miR-124
Singleton Clust S25 hsa-miR-1
  1. Clusters were classified according to their composition, as for Table 1.