Table 1 Gene ontology terms for genes differentially expressed between the two house finch populations when comparing expression profiles of the spleen between populations
GO term | Annotated | Significant | Expected | Classic p | Corrected p | |
|---|---|---|---|---|---|---|
GO:0044281 (BP) | Small molecule metabolic process | 818 | 39 | 17 | 3.7*10−7 | 3.0*10−3 |
GO:0019752 (BP) | Carboxylic acid metabolic process | 284 | 20 | 6 | 1.7*10−6 | 3.0*10−3 |
GO:0043436 (BP) | Oxoacid metabolic process | 284 | 20 | 6 | 1.7*10−6 | 3.0*10−3 |
GO:0006082 (BP) | Organic acid metabolic process | 285 | 20 | 6 | 1.8*10−6 | 3.0*10−3 |
GO:0042180 (BP) | Cellular ketone metabolic process | 296 | 20 | 6 | 3.2*10−6 | 5.0*10−3 |
GO:0006520 (BP) | Cellular amino acid metabolic process | 158 | 14 | 3 | 5.2*10−6 | 6.0*10−3 |
GO:0006725 (BP) | Cellular aromatic compound metabolic process | 57 | 8 | 1 | 2.3*10−5 | 2.4*10−2 |
GO:0009156 (BP) | Ribonucleoside monophosphate biosynthetic process | 18 | 5 | 0 | 2.7*10−5 | 2.5*10−2 |
GO:0009124 (BP) | Nucleoside monophosphate biosynthetic process | 19 | 5 | 0 | 3.6*10−5 | 2.9*10−2 |
GO:0072522 (BP) | Purine-containing compound biosynthetic process | 66 | 8 | 1 | 6.7*10−5 | 4.7*10−2 |
GO:0009161 (BP) | Ribonucleoside monophosphate metabolic process | 22 | 5 | 0 | 7.8*10−5 | 4.7*10−2 |
GO:0009127 (BP) | Purine nucleoside biosynthetic process | 12 | 4 | 0 | 8.4*10−5 | 4.7*10−2 |
GO:0009168 (BP) | Purine ribonucleoside biosynthetic process | 12 | 4 | 0 | 8.4*10−5 | 4.7*10−2 |
GO:0006563 (BP) | L-serine metabolic process | 5 | 3 | 0 | 9.0*10−5 | 4.7*10−2 |
GO:0009112 (BP) | Nucleobase metabolic process | 13 | 4 | 0 | 1.2*10−4 | 5.5*10−2 |
GO:0009123 (BP) | Nucleoside monophosphate metabolic process | 24 | 5 | 1 | 1.2*10−4 | 5.5*10−2 |
GO:0034654 (BP) | Compound biosynthetic process | 94 | 9 | 2 | 1.5*10−4 | 6.4*10−2 |
GO:0009113 (BP) | Purine nucleobase biosynthetic process | 6 | 3 | 0 | 1.8*10−4 | 7.3*10−2 |
GO:0043292 (CC) | Contractile fiber | 41 | 7 | 1 | 6.0*10−6 | 6.0*10−3 |
GO:0019842 (MF) | Vitamin binding | 66 | 8 | 1 | 7.9*10−5 | 4.2*10−2 |
GO:0016742 (MF) | Transferase activity | 5 | 3 | 0 | 9.6*10−5 | 4.2*10−2 |
GO:0016840 (MF) | Carbon-nitrogen lyase activity | 5 | 3 | 0 | 9.6*10−5 | 4.2*10−2 |
GO:0016741 (MF) | Transferase activity, transferring one-carbon groups | 108 | 10 | 2 | 1.0*10−4 | 4.2*10−2 |
GO:0003824 (MF) | Catalytic activity | 2828 | 84 | 61 | 1.2*10−4 | 4.2*10−2 |
GO:0030170 (MF) | Pyridoxal phosphate binding | 37 | 6 | 1 | 1.2*10−4 | 4.2*10−2 |
GO:0070279 (MF) | Vitamin B6 binding | 37 | 6 | 1 | 1.2*10−4 | 4.2*10−2 |
GO:0016712 (MF) | Oxidoreductase activity | 6 | 3 | 0 | 1.9*10−4 | 4.6*10−2 |
GO:0016740 (MF) | Transferase activity | 959 | 37 | 21 | 2.4*10−4 | 4.8*10−2 |