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Table 4 Evaluation of SNP array in all samples

From: Development and evaluation of the first high-throughput SNP array for common carp (Cyprinus carpio)

Category

C. carpio

Related species of C. carpio

 

Percentage (%)

SNP count

Probe count

Percentage (%)

SNP count

Probe count

Poly high resolution

74.06

185,150

220,615

21.65

54,116

60,143

No minor homology

1.68

4,202

7,173

2.70

6,748

8,772

Mono high resolution

0.07

180

315

0.04

88

126

Call rate below threshold

13.50

33,742

58,146

9.59

23,981

32,564

Off Target Variation (OTV)

1.15

3,610

3,610

4.38

10,941

20,424

Other

9.54

23,844

26,734

61.65

154,126

194,564

Total

100.00

250,000

316,593

100

250,000

316,593