Table 5 Evaluation of SNP array in eight Cyprinus carpio related species
From: Development and evaluation of the first high-throughput SNP array for common carp (Cyprinus carpio)
Category | SNP count | |||||||
|---|---|---|---|---|---|---|---|---|
|  | C. carassius(n = 10) | M. piceus(n = 10) | C. idella(n = 10) | H. molitrix(n = 10) | H. nobilis(n = 10) | M. amblycephala(n = 10) | D. rerio(n = 15) | L. waleckii(n = 5) |
Poly high resolution | 17,447 | 30,872 | 8,162 | 9,153 | 18,629 | 18,816 | 2,911 | 1,556 |
No minor homology | 30,581 | 28,148 | 27,880 | 27,514 | 28,623 | 31,707 | 37,499 | 28,314 |
Mono high resolution | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Call rate below threshold | 22,240 | 12,964 | 19,192 | 19,230 | 18,532 | 16,751 | 14,533 | 23,656 |
Off Target Variation (OTV) | 10,941 | 10,941 | 10,941 | 10,941 | 10,941 | 10,941 | 10,941 | 10,941 |
Other | 168,791 | 167,075 | 183,825 | 183,162 | 173,275 | 171,785 | 184,116 | 185,533 |
Total | 250,000 | |||||||