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Table 5 Evaluation of SNP array in eight Cyprinus carpio related species

From: Development and evaluation of the first high-throughput SNP array for common carp (Cyprinus carpio)

Category SNP count
  C. carassius(n = 10) M. piceus(n = 10) C. idella(n = 10) H. molitrix(n = 10) H. nobilis(n = 10) M. amblycephala(n = 10) D. rerio(n = 15) L. waleckii(n = 5)
Poly high resolution 17,447 30,872 8,162 9,153 18,629 18,816 2,911 1,556
No minor homology 30,581 28,148 27,880 27,514 28,623 31,707 37,499 28,314
Mono high resolution 0 0 0 0 0 0 0 0
Call rate below threshold 22,240 12,964 19,192 19,230 18,532 16,751 14,533 23,656
Off Target Variation (OTV) 10,941 10,941 10,941 10,941 10,941 10,941 10,941 10,941
Other 168,791 167,075 183,825 183,162 173,275 171,785 184,116 185,533
Total 250,000
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