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Table 2 List of open reading frames chosen for this study

From: Deep sequencing of the tobacco mitochondrial transcriptome reveals expressed ORFs and numerous editing sites outside coding regions

ORF

Genome start site

Genome stop site

Peak DOC

Number of edit sites

Polysome association

Protein homologies of Polysome associated ORFs

     

Super

Pellet

 

Cox2(+Control)

156352

158494

17900

14

+

+

 

Cox2+EDTA

    

+

-

 

Background

48550

49035

<75

-

+

-

 

177

31683

32216

1537

-

+

+

none found

197

74704

75297

1900

5

+

-

 

265/atp8

85475

86272

2481

2

+

+

full length ATPase subunit 8

129b

100135

100524

386

-

+

-

 

175

102481

103008

215

-

-

-

 

25/atp4

113853

114449

13360

10

+

+

full length ATPase subunit 4

222

114996

115664

8288

-

+

+

none found

239

171890

172609

1194

-

+

-

 

216

191161

191811

5943

-

+

+

fragment of ribosomal protein S1

306

215367

216287

365

-

+

-

 

147

221540

221983

6105

-

+

+

full length ribosomal protein L10

144

229441

229875

311

-

+

-

 

118

229726

230082

387

-

+

-

 

160

231140

231622

816

-

+

+

none found

125d

257199

257576

4404

-

+

-

 

115

306250

306597

424

-

+

+

none found

166b

324805

325305

1182

-

+

+

fragment of cytochrome coxdase

159b/rpl10

360283

360762

8330

4

+

+

full length ribosomal protein L10

  1. Location of start and stop codons refer to GenBank accession NC_006581.1. Peak DOC refers to the approximate highest depth of coverage noted for that transcript. Edit sites are the number of possible C→U edits found within the coding regions.
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BMC Genomics

ISSN: 1471-2164

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