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Table 1 Pyrenochaeta lycopersici genome statistics

From: De novo genome assembly of the soil-borne fungus and tomato pathogen Pyrenochaeta lycopersici

  Scaffolds Contigs
Number of sequences 7,079 18,757
Maximum sequence length (bp) 768,125 440,042
Average length (bp) 7,747 2,856
N50 (bp) 73,363 33,727
N90 (bp) 313,035 127,052
Sequences > 500bp Scaffolds Contigs
Number of sequences 5,176 10,176
Average length (bp) 10,479 5,037
N50 (bp) 75,634 37,929
N90 (bp) 315,231 10,146
Sequences > 1Kb Scaffolds Contigs
Number of sequences 4,056 5,863
Average length (bp) 13,174 8,217
N50 (bp) 76,086 43,602
N90 (bp) 315,231 130,015
Sequences > 5Kb Scaffolds Contigs
Number of sequences 1,530 1,350
Average length (bp) 30,926 29,077
N50 (bp) 96,502 55,291
N90 (bp) 369,997 139,267
Sequences > 10Kb Scaffolds Contigs
Number of sequences 784 858
Average length (bp) 53,680 41,789
N50 (bp) 112,715 62,806
N90 (bp) 391,898 139,822
Total number of assembled bases (without Ns) 54,841,665 bp (53,572,698 bp)
Estimated x-fold genome coverage 217×
GC percentage content 39.40%
Number of annotated gene loci 17,411
Number of annotated putative transcripts 27,275
Mean gene size (bp) 2,015
Mean exon size (bp) 676.6
Mean number of exons per gene 4.1