Skip to main content

Advertisement

Table 2 Highly represented protein families

From: De novo genome assembly of the soil-borne fungus and tomato pathogen Pyrenochaeta lycopersici

  AN BC BG CG FO LM NC PL PTR SN P value* Adjusted P-value**
Genome assembly size ( Mb) 30.0 42.7 87.9 51.6 61.4 44.9 41.0 54.8 37.8 37.3   
Number of genes 10,827 16,714 7,073 12,361 21,354 12,469 9,730 17,411 12,300 12,382   
Ankyrin repeats 32 28 9 34 61 12 18 67 24 24 8.90E-04 5.14E-04
D-Tyr-tRNA(Tyr) deacylase 1 1 1 1 1 1 1 5 1 1 NA NA
DDE superfamily endonuclease 4 12 2 2 13 2 0 89 11 1 1.70E-08 1.47E-07
Double stranded RNA binding domain 1 2 2 2 2 2 2 7 2 0 1.61E-06 2.32E-06
Mo25-like 1 1 1 1 1 1 1 5 1 1 NA NA
NACHT domain 4 9 0 10 41 4 7 53 3 6 1.90E-04 1.24E-04
NAD-specific glutamate dehydrogenase 0 0 0 0 0 0 0 8 0 0 NA NA
NB-ARC domain 8 6 0 1 6 0 1 42 6 1 3.69E-08 1.60E-07
NPL4 family 1 1 1 1 1 1 1 5 1 1 NA NA
Tetratricopeptide repeat 24 17 7 9 20 4 12 76 21 9 2.82E-07 8.14E-07
Transmembrane alpha-helix domain 2 1 0 3 3 1 0 10 4 0 9.52E-06 9.15E-06
Transposase IS4 0 0 0 1 17 0 0 11 0 0 1.28E-02 5.28E-03
hAT family dimerisation domain 0 1 0 0 76 0 0 30 0 0 1.30E-01 4.17E-02
Helix-turn-helix, Psq domain 0 8 0 0 0 0 0 24 0 0 1.01E-06 1.75E-06
Major facilitator superfamily 264 194 36 264 359 150 114 229 189 231 5.21E-01 1.45E-01
Cytochrome P450 116 120 13 138 157 62 40 125 102 122 2.63E-01 7.68E-02
Fungal specific transcription factor domain 232 94 20 176 252 100 77 174 96 100 9.93E-02 3.31E-02
Protein kinase domain 105 94 82 104 146 116 103 170 108 115 2.00E-04 1.24E-04
Heterokaryon incompatibility protein (HET) 7 64 1 51 74 38 61 284 57 98 1.01E-06 1.75E-06
  1. Selected protein families highly represented in P. lycopersici genome. AN, Aspergillus nidulans; BC, Botrytis cinerea; BG, Blumeria graminis; CG, Colletotrichum graminicola; FO, Fusarium oxysporum; LM, Leptosphaeria maculans; NC, Neurospora crassa; PL Pyrenochaeta lycopersici; PTR, Pyrenophora tritici repentis; SN, Stagonospora nodorum. *The cutoff of significance is set at P < 0.05. **Benjamini and Hockberg method was used to calculate adjusted p-values [90].