Figure 7

Selecting the Genome Browser link (purple ‘B’ box from Figure 1) from a BLASTP result entry of queried known homeodomains against the complete Mnemiopsis Unfiltered Protein Models directs the user to the Genome Browser displaying the applicable Mnemiopsis transcript model. Shown above the 2.2UF track in the browser is the PFAM2.2 track displaying evidence of a homeobox in the targeted region. Clicking on the ‘Homeobox’ link in the PFAM2.2 track opens a new browser window displaying the Pfam-A domain (ML1991_pfa) prediction results derived from a pre-compiled hmmscan run using HMMER. This Pfam-A domain record provides the genomic location of the Pfam-A domain, the genomic coordinates, transcript and protein sequences, and the hmmscan output for the homeodomain prediction.