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Figure 5 | BMC Genomics

Figure 5

From: Integrating bioinformatic resources to predict transcription factors interacting with cis-sequences conserved in co-regulated genes

Figure 5

Comparison between bioinformatically predicted and experimentally isolated TFs. Cis-elements were classified as ‘predictable’ (left) or as unpredictable (right) when the footprintDB repository contained at least one annotated TF homologous to the experimental Y1H-inferred binding proteins. Left vertical axis: columns report the number of TFs assigned to each tested cis-element by either footprintDB (blue) or the Y1H assay (purple), showing in green those assigned by both methods. Right vertical axis: line shows STAMP E-values for all 15 cis-elements aligned to the first hit validated by Y1H assays. Note that both vertical axes are in logarithmic scale.

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BMC Genomics

ISSN: 1471-2164

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