Table 3 Summary of the interactions identified and verified in yeast one-hybrid experiments
| Â | Â | Studied cis-sequences | Identified transcription factors | |||
|---|---|---|---|---|---|---|
Motif group | Â | Screened sequence | Mutated sequence | Gene ID | Family | Name |
I | Â | AACGTGGG | AACCTCGG | AT3G09370 | 3R-MYB | MYB3R3 |
I | Â | AACGTGGG | AACCTCGG | AT5G43650 | bHLH | bHLH92 |
I | Â | AACGTGGG | AACCTCGG | AT4G32890 | GATA | GATA9 |
I | Â | AACGTGGG | AACCTCGG | AT5G51870 | MADS | AGL71 |
I | Â | AACGTGGG | AACCTCGG | AT3G12910 | NAC | - |
I | Â | GCACGTGGAG | GCAGCTGGAG | AT1G59640 | bHLH | bHLH031, ZCW32 |
I | Â | GCACGTGGAG | GCAGCTGGAG | AT2G42300 | bHLH | bHLH048 |
I | Â | GCACGTGGAG | GCAGCTGGAG | AT2G18300 | bHLH | bHLH064, HBI1 |
I | Â | GCACGTGGAG | GCAGCTGGAG | AT5G61270 | bHLH | bHLH072, PIF7 |
I | Â | GCACGTGGAG | GCAGCTGGAG | AT1G10120 | bHLH | bHLH074 |
I | Â | GCACGTGGAG | GCAGCTGGAG | AT5G62610 | bHLH | bHLH079 |
I | Â | GCACGTGGAG | GCAGCTGGAG | AT1G51070 | bHLH | bHLH115 |
II | Â | GCTGCCGGAGA | GCTGACTGAGA | AT2G43000 | NAC | ANAC042, JUB1 |
II | x | GCTGCCGGAGA | GCTGACTGAGA | AT3G12910 | NAC | - |
II | Â | GCCACGTCAGC | GCCATATCAGC | AT3G12910 | NAC | - |
III | Â | GGTTGTGGT | GGTACTGGT | AT5G52260 | R2R3-MYB | MYB019 |
III | x | GGTTGTGGT | GGTACTGGT | AT1G74650 | R2R3-MYB | MYB031, ATY13 |
III | Â | GGTTGTGGT | GGTACTGGT | AT3G48920 | R2R3-MYB | MYB045 |
III | Â | GGTTGTGGT | GGTACTGGT | AT5G54230 | R2R3-MYB | MYB049 |
III | Â | GGTTGTGGT | GGTACTGGT | AT1G57560 | R2R3-MYB | MYB050 |
III | Â | GGTTGTGGT | GGTACTGGT | AT1G16490 | R2R3-MYB | MYB058 |
III | Â | GGTTGTGGT | GGTACTGGT | AT1G08810 | R2R3-MYB | MYB060 |
III | Â | GGTTGTGGT | GGTACTGGT | AT1G09540 | R2R3-MYB | MYB061 |
III | Â | GGTTGTGGT | GGTACTGGT | AT1G56650 | R2R3-MYB | MYB075, PAP1 |
III | Â | GGTTGTGGT | GGTACTGGT | AT5G26660 | R2R3-MYB | MYB086 |
III | Â | GGTTGTGGT | GGTACTGGT | AT5G10280 | R2R3-MYB | MYB092 |
III | Â | GGTTGTGGT | GGTACTGGT | AT3G47600 | R2R3-MYB | MYB094 |
III | Â | GGTTGTGGT | GGTACTGGT | AT1G63910 | R2R3-MYB | MYB103 |
III | Â | GGTTGTGGT | GGTACTGGT | AT3G02940 | R2R3-MYB | MYB107 |
III | Â | ACCAAACAT | ACGATACAT | AT2G47190 | R2R3-MYB | MYB002 |
III | Â | ACCAAACAT | ACGATACAT | AT3G24310 | R2R3-MYB | MYB071, MYB305 |
III | Â | ACCAAACAT | ACGATACAT | AT3G06490 | R2R3-MYB | MYB108, BOS1 |
III | Â | ACCAAACAT | ACGATACAT | AT1G48000 | R2R3-MYB | MYB112 |
III | Â | CACCTAAC | CTCCTTAC | AT2G47190 | R2R3-MYB | MYB002 |
III | Â | CACCTAAC | CTCCTTAC | AT5G52260 | R2R3-MYB | MYB019 |
III | x | CACCTAAC | CTCCTTAC | AT1G74650 | R2R3-MYB | MYB031, ATY13 |
III | Â | CACCTAAC | CTCCTTAC | AT5G54230 | R2R3-MYB | MYB049 |
III | Â | CACCTAAC | CTCCTTAC | AT1G57560 | R2R3-MYB | MYB050 |
III | Â | CACCTAAC | CTCCTTAC | AT1G16490 | R2R3-MYB | MYB058 |
III | Â | CACCTAAC | CTCCTTAC | AT1G08810 | R2R3-MYB | MYB060 |
III | Â | CACCTAAC | CTCCTTAC | AT1G09540 | R2R3-MYB | MYB061 |
III | Â | CACCTAAC | CTCCTTAC | AT1G56160 | R2R3-MYB | MYB072 |
III | Â | CACCTAAC | CTCCTTAC | AT5G26660 | R2R3-MYB | MYB086 |
III | Â | CACCTAAC | CTCCTTAC | AT5G10280 | R2R3-MYB | MYB092 |
III | Â | CACCTAAC | CTCCTTAC | AT3G47600 | R2R3-MYB | MYB094 |
III | Â | CACCTAAC | CTCCTTAC | AT5G62320 | R2R3-MYB | MYB099 |
III | Â | CACCTAAC | CTCCTTAC | AT1G63910 | R2R3-MYB | MYB103 |
III | Â | CACCTAAC | CTCCTTAC | AT3G02940 | R2R3-MYB | MYB107 |
III | Â | CACCTAAC | CTCCTTAC | AT3G06490 | R2R3-MYB | MYB108, BOS1 |
III | Â | TCGGACCAA | TCGGGTCAA | None | - | - |
IV | Â | CTCTCTCAC | CTCGCTCAC | AT2G21230 | bZIP | bZIP30 |
IV | Â | CTCTCTCAC | CTCGCTCAC | AT1G06850 | bZIP | bZIP52 |
IV | x | CTCTCTCAC | CTCGCTCAC | AT3G12910 | NAC | - |
V | Â | ATGTGATGC | ATGCAATGC | AT4G17880 | bHLH | bHLH004, MYC4 |
V | Â | ATGTGATGC | ATGCAATGC | AT2G42300 | bHLH | bHLH048 |
V | Â | ATGTGATGC | ATGCAATGC | AT2G18300 | bHLH | bHLH064, HBI1 |
V | Â | ATGTGATGC | ATGCAATGC | AT5G61270 | bHLH | bHLH072, PIF7 |
V | Â | GCATCACCC | GCATAGCCC | AT2G40970 | G2-like | MYBC1 |
V | Â | GCATCACCC | GCATAGCCC | AT5G15840 | Zn finger | CO |
VI | Â | CCAACTAA | CCAGTTAA | AT5G52260 | R2R3-MYB | MYB019 |
VI | Â | CCAACTAA | CCAGTTAA | AT1G74650 | R2R3-MYB | MYB031, ATY13 |
VI | Â | CCAACTAA | CCAGTTAA | AT5G06100 | R2R3-MYB | MYB033 |
VI | Â | CCAACTAA | CCAGTTAA | AT3G48920 | R2R3-MYB | MYB045 |
VI | Â | CCAACTAA | CCAGTTAA | AT5G54230 | R2R3-MYB | MYB049 |
VI | Â | CCAACTAA | CCAGTTAA | AT1G57560 | R2R3-MYB | MYB050 |
VI | Â | CCAACTAA | CCAGTTAA | AT1G16490 | R2R3-MYB | MYB058 |
VI | Â | CCAACTAA | CCAGTTAA | AT1G08810 | R2R3-MYB | MYB060 |
VI | Â | CCAACTAA | CCAGTTAA | AT1G09540 | R2R3-MYB | MYB061 |
VI | Â | CCAACTAA | CCAGTTAA | AT4G37260 | R2R3-MYB | MYB073 |
VI | Â | CCAACTAA | CCAGTTAA | AT2G26960 | R2R3-MYB | MYB081 |
VI | Â | CCAACTAA | CCAGTTAA | AT5G26660 | R2R3-MYB | MYB086 |
VI | Â | CCAACTAA | CCAGTTAA | AT5G10280 | R2R3-MYB | MYB092 |
VI | Â | CCAACTAA | CCAGTTAA | AT3G47600 | R2R3-MYB | MYB094 |
VI | Â | CCAACTAA | CCAGTTAA | AT4G21440 | R2R3-MYB | MYB102, AtM4 |
VI | Â | CCAACTAA | CCAGTTAA | AT1G63910 | R2R3-MYB | MYB103 |
VI | Â | CCAACTAA | CCAGTTAA | AT5G49330 | R2R3-MYB | MYB111, PFG3 |
VII | Â | TCTCCTCCAC | TCTCGACCAC | AT5G61270 | bHLH | bHLH072, PIF7 |
VII | Â | TCTCCTCCAC | TCTCGACCAC | AT2G21230 | bZIP | bZIP30 |
VII | Â | TCTCCTCCAC | TCTCGACCAC | AT3G12910 | NAC | - |
VII | Â | CTTTCCCC | CTTGACCC | AT4G11680 | C3HC4 | - |
VII | Â | CTTTCCCC | CTTGACCC | AT3G12720 | MYB | MYB67 |
VII | Â | CTTTCCCC | CTTGACCC | AT5G43290 | WRKY | WRKY49 |
VII | Â | CCTCCTTCT | CCTCAGTCT | None | - | - |