Skip to main content

Advertisement

Table 1 Genome sizes and numbers of PKS-I, NRPS, and PKS-I/NRPS hybrid gene clusters in Nocardia strains

From: Genome based analysis of type-I polyketide synthase and nonribosomal peptide synthetase gene clusters in seven strains of five representative Nocardia species

Strain name Genome size* (Mb) State of sequence Source Number of gene clusters (Average number of genes/modules per cluster)
     PKS-I NRPS PKS-I/NRPS hybrid Total number of clusters
N. farcinica IFM 10152 [11] 6.0 Complete Clinical (human sputum) 4 7 1 12
(1.0/1.0) (1.6/7.7) (6.0/5.0) (1.8/5.6)
N. cyriacigeorgica GUH-2 [8, 9] 6.2 Complete Clinical (human kidney) 5 9 1 15
(1.2/1.0) (1.4/5.8) (8.0/8.0) (1.8/4.3)
N. asteroides NBRC 15531T[1, 30] 7.0 Draft Clinical (fatal brain abscess) 7 13 2 22
(1.4/2.6) (1.2/4.5) (4.0/4.0) (1.5/3.9)
N. otitidiscaviarum IFM 11049 [31] 7.8 Draft Clinical (human sputum) 4 12 2 18
(1.0/1.0) (1.2/3.3) (4.0/11.0) (1.5/3.6)
N. brasiliensis NBRC 14402T[32, 33] 8.9 Draft Clinical (leg lesion) 10 13 4 27
(1.4/1.1) (1.6/5.0) (5.5/4.3) (2.1/3.4)
N. brasiliensis IFM 10847 [12] 9.2 Draft Clinical (human pus) 11 13 6 30
(1.5/1.1) (1.5/5.1) (4.8/4.3) (2.2 /3.5)
N. brasiliensis HUJEG-1 [10] 9.4 Complete Clinical (human mycetoma) 11 13 6 30
     (1.4/1.2) (1.3/4.5) (4.8/4.3) (2.0/3.2)
  1. *In draft genomes, genome sizes are estimated values. Average numbers of genes/modules per cluster are indicated in parenthesis.