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Table 2 Empirical comparison of consistency in positive selection signals in HapMap2 panels using haploPS, iHS and XP-EHH on the original 2.6 million SNPs and on a reduced panel of around 55,000 SNPs

From: Evaluating the possibility of detecting evidence of positive selection across Asia with sparse genotype data from the HUGO Pan-Asian SNP Consortium

Method Number of positively selected region identified
  Original density Reduced density (overlapped with original1)
haploPS 310 3 (2)
iHS 188 57 (6)
XP-EHH 35 9 (0)
Fst 159 123 (28)
  1. 1Number of signals that have been identified by both the original-density dataset and the reduced-density dataset.