Table 1 Summary of Roche 454 GS-FLX assembly of S. lycopersicoides transcriptome sequences

Total reads

654,159

164,925,531

Average read length

252

Aligned reads

554,524 (84.77%)

140,923,440 (85.45%)

Average trimmed read length

254

All contigs

13,008

9,327,270

Average contig length

717

Large contigs

8,431

7,863,766

Average large contig length

932

N50 large contig length

988

Largest contig

4,469

Isotigs

11,916

1,0722,599

Average isotig length

899

N50 isotig length

1,041

Largest isotig

4,504