Repeat class/family | HSY (8062184Â bp) | Corresponding X (5298217Â bp) | VmX (1079651Â bp) | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Known repeats | Known plus papaya repeats | Known repeats | Known plus papaya repeats | Known repeats | Known plus papaya repeats | |||||||
Length occupied (bp) | Percentage of sequence (%) | Length occupied (bp) | Percentage of sequence (%) | Length occupied (bp) | Percentage of sequence (%) | Length occupied (bp) | Percentage of sequence (%) | Length occupied (bp) | Percentage of sequence (%) | Length occupied (bp) | Percentage of sequence (%) | |
Retroelements | 1375153 | 17.0 | 5130402 | 63.6 | 882569 | 16.4 | 2867602 | 54.1 | 114116 | 10.5 | 178174 | 16.4 |
 LINEs | 560 | 0.0 | 50037 | 0.6 | 778 | 0.0 | 64004 | 1.2 | 333 | 0.0 | 6351 | 0.6 |
 LTR elements | 1374593 | 17.0 | 5080365 | 63.0 | 881791 | 16.4 | 2803598 | 52.9 | 113782 | 10.5 | 171823 | 15.9 |
  Ty1/Copia | 180993 | 2.2 | 400619 | 5.0 | 166009 | 3.1 | 332850 | 6.3 | 59403 | 5.5 | 97554 | 9.0 |
  Ty3/Gypsy | 1065137 | 13.2 | 3735520 | 46.3 | 616379 | 11.5 | 1997877 | 37.7 | 32631 | 3.0 | 48144 | 4.4 |
DNA transposons | 1111 | 0.0 | 7819 | 0.1 | 1256 | 0.0 | 4704 | 0.1 | 4147 | 0.4 | 8863 | 0.8 |
  En-Spm | 81 | - | 81 | 0.0 | 526 | 0.0 | 512 | 0.0 | 2581 | 0.2 | 4513 | 0.4 |
  MuDR-IS905 | - | - | - | - | 93 | - | 93 | 0.0 | 402 | 0.0 | 901 | 0.1 |
Unclassified | 193258 | 2.4 | 1088041 | 13.5 | 57890 | 1.1 | 507519 | 9.6 | 5876 | 0.5 | 39784 | 3.7 |
Total interspersed repeats | 1569522 | 19.5 | 6226262 | 77.2 | 941715 | 17.5 | 3379825 | 63.8 | 124139 | 11.5 | 226821 | 20.9 |