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Table 1 Number of genes in the annotation

From: XSAnno: a framework for building ortholog models in cross-species transcriptome comparisons

Species

Annotation Name

Protein coding

Pseudogene

Processed transcript

lincRNA

Others

Total

Human-chimpanzee

WGA

19177

9348

5265

5173

7965

46928

WGA+LA

18272

6796

4831

4825

6257

40981

XSAnno

16774

6205

4296

4241

6146

37662

Human-macaque

WGA

18784

6668

4941

4837

6555

41785

WGA+LA

17344

2532

3926

3947

2477

30226

XSAnno

15051

2271

2900

2812

1251

24285

Human-chimpanzee-macaque

POED

17105

2528

3756

3697

2842

29928