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Table 3 RPKM of the upstream and downstream regions of TSSs of genes with tissue-specific pancRNAs

From: Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals

Cerebral cortex vs Heart

Upstream region

Downstream region

Antisense RPKM

Sense RPKM

Antisense RPKM

Sense RPKM

Cerebral cortex-specific pancRNA-bearing genes

Cerebral cortex

98.1

18.5

12.9

369.9

Heart

2.2

4.6

2.9

163.8

Heart-specific pancRNA-bearing genes

Cerebral cortex

3.7

12.1

1.4

172.3

Heart

83.7

18.6

6.4

516.6

  1. The values in this table were normalized by the number of genes. In this analysis, we defined a pancRNA whose RPKM was higher than 0.3 in one tissue and lower than 0.1 in the other as a tissue-specific pancRNA.