Table 1 List of Mycobacterium abscessus genomes here studied
From: Genome analysis reveals three genomospecies in Mycobacterium abscessus
Clusters | Organism | Isolated from | Geography | BioProject |
|---|---|---|---|---|
C1 | M. abscessus Type strain | human knee infection | United States | PRJNA61613, PRJNA15691 |
C1 | M. abscessus M93 | sputum sample from a Malaysian patient presenting with a prolonged productive cough suggestive of a bacterial lower respiratory tract infection | Malysia | PRJNA180393, PRJNA84203 |
C1 | M. abscessus M94 | sputum sample of a Malaysian patient with a persistent cough and fever and consolidation in the chest radiograph | Malysia | PRJNA180394, PRJNA88149 |
C1 | M. abscessus M152 | acid-fast bacillus positive sputum of a Malaysian man | Malysia | PRJNA159789 |
C1 | M. massiliense strain GO 06 | undergone knee joint surgery | Brazil | PRJNA170732, PRJNA168263 |
C2A | M. massiliense Type strain | sputum specimen from hemoptoic pneumonia | Marseille | PRJNA180742, PRJNA65215 |
C2A | M. massiliense M18 | lymph node biopsy specimen from a Malaysian patient suspected of having tuberculous cervical lymphadenitis | Malysia | PRJNA89593 |
C2A | M. massiliense M154 | bronchoalveolar lavage fluid of a Malaysian patient presenting with lower respiratory tract infection | Malysia | PRJNA89603 |
C2B | M. abscessus 47Â J26 | sputum sample from a patient with Cystis fibrosis | England | PRJNA179981, PRJNA73255 |
C2B | M. abscessus M115 | sputum from a Malaysian patient presenting with persistent cough and loss of body weight suggestive of pulmonary tuberculosis | Malysia | PRJNA89601 |
C2B | M. abscessus M139 | sputum sample of a 26-year-old Nepalese male presenting with hemoptysis | Nepal | PRJNA159701 |
C2B | M. abscessus M172 | putum isolate from a Malaysian patient | Malysia | PRJNA89599 |
C3A | M. bolletii Type strain | respiratory tract specimen collected in woman with hemoptoic pneumonia | Marseille | PRJNA180015, PRJNA73695 |
C3B | M. abscessus M24 | the bronchoalveolar lavage fluid of a Malaysian patient | Malysia | PRJNA89595 |