Table 6 Inclusion of IMMADs in larger elements and co-occurring motifs
Penta-, hexa, and heptameric IMMADs | Larger elements | Co-occurring IMMADs within introns of the same MASS genes |
|---|---|---|
AGCAGAC | CeRep25B minisatellite, 609 base tandem repeats in frm-1 | GGTCTGC, GATGAC, AGGAG |
GGTCTGC | CeRep25B minisatellite | AGCAGAC |
CCATCGT | HelitronY4_CE transposon | GATGAC, TCTCTCT, ACYCCA, GAATGTT |
GAATGTT | HelitronY4_CE transposon | CCATCGT, TCTCTCT, ACYCCA, CCACA, GATGAC |
ACYCCA | ACYCCACA | CCATCGT, TCTCTCT, GATGAC, GAATGTT, CCACA, GTCGT |
ACATTCG | - | TCTCTCT |
AGCCTCA | AGCCTCAACCAAAA(A)TCTC minisatellite | - |
RAGAAG | RAGAAGAAG, AGGAGAAG | AGGAG |
WCTTCTT | WCTTCTTCTT | - |
GATGAC | - | AGCAGAC, TCTCTCT, CCATCGT, ACYCCA, GAATGTT |
TCTCTCT | TCTCTCTCT | GATGAC, CCATCGT, ACATTCG, GTCGT, ACYCCA, GAATGTT |
CCAGC | - | TGGAC |
TGGAC | - | CCAGC, AGGAG |
CAHCC | - | - |
GTCGT | GTCGTCGT | TCTCTCT, CCACA, ACYCCA |
AGGAG | AGGAGAAG, 609 base tandem repeats in frm-1 | AGCAGAC, RAGAAG, TGGAC, CCACA |
CCACA | - | AGGAG, GTCGT, ACYCCA, GAATGTT |