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Table 1 Coverage estimates and orphaned reads mapping statistics

From: Discovery of transgene insertion sites by high throughput sequencing of mate pair libraries

Categories SOD1-G93A (PE)* Prp-TDP43A315T(PE) SOD1-G93A (MP)* Prp-TDP43A315T(MP)
Total number of reads 478630820 474440050 900015938 822321006
Quality filtered reads 370691294 369292346 675672452 662089438
Raw coverage# 17.73 17.57 33.33 30.46
Analysis coverage# 13.73 13.68 25.02 24.52
Orphaned reads mapped to Mus 388 2371 8034 8386
Reads found in the candidates insertion site region 3 5 113 99
  1. *PE: Paired end library.
  2. *MP: Mate-pair library.
  3. #Raw coverage corresponds to the sequencing reads generated from machine. Analysis coverage is calculated from quality filtered reads and this dataset is used for insertion site discovery.