Table 2 Statistics of the viral-bacterial assemblies
Assembly | Largest contig (bp) | N50 (bp) | # contigs | % chimeric contigs | % viral-bacterial chimeric contigs | % reads assembled | % reads assembled on their original genomes | % reads within a viral bacterial hit | Genomes recovered | % contig identity against its original genome (median) |
|---|---|---|---|---|---|---|---|---|---|---|
Celera 02 | 20633 | 1646 | 4932 | 14.82 | 0.914 | 24.95 | 96.36 | 0.38 | 0 | 98.63 |
Celera 05 | 20633 | 1876 | 4616 | 17.20 | 1.17 | 26.97 | 95.88 | 0.38 | 0 | 99.00 |
Celera meta | 134766 | 2804 | 4630 | 30.65 | 1.99 | 43.08 | 88.36 | 0.17 | 0 | 99.00 |
Genovo | 139026 | 929 | 33552 | 29.32 | 0.55 | 87.97 | 84.57 | 0.21 | 1 | 98.00 |
Minimo 100/98 | 1636 | 742 | 7815 | 4.84 | 0.05 | 3.17 | 95.03 | 7.28 | 0 | 98.00 |
Minimo 60/95 | 3014 | 518 | 61092 | 4.46 | 0.07 | 32.10 | 96.33 | 3.25 | 0 | 97.00 |
Newbler 100/98 | 75826 | 1130 | 3692 | 19.97 | 1.49 | 30.88 | 94.69 | 0.45 | 0 | 99.52 |
Newbler 60/95 | 137947 | 1325 | 10643 | 20.70 | 1.15 | 70.29 | 93.51 | 0.27 | 0 | 99.10 |
Velvet | 1689 | 445 | 18366 | 9.66 | 0.19 | 8.48 | 91.18 | 3.68 | 0 | 97.56 |
Meta velvet | 1680 | 445 | 18663 | 9.63 | 0.18 | 8.47 | 91.15 | 3.70 | 0 | 97.55 |
Optimal | 153167 | 1333 | 27166 | 0.00 | 0.00 | 84.31 | 99.71 | 0.32 | 6 | 100.00 |