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Table 3 Predicted protein genes comparison

From: Complete sequencing of Novosphingobium sp. PP1Y reveals a biotechnologically meaningful metabolic pattern

  

Total ORFs

ORFs in PP1Y replicons

Genome

Replicon

 

Chr

Mpl

Lpl

Spl

PP1Y

Chr

3,481

3,481

203

30

4

Mpl

975

240

975

10

-

Lpl

199

43

10

199

-

 

Spl

54

5

-

-

54

N.aro

Chr

3,324

1,741

296

43

22

pNL1

182

203

32

8

-

 

pNL2

431

204

232

5

-

E.lit

Chr

3,012

1,513

-

-

-

S.ala

Chr

3,166

1,536

-

-

-

S.wit

Chr

4,851

1,543

-

-

-

Z.mob1

Chr

1,801

885

-

-

-

Z.mobZ

Chr

1,729

865

-

-

-

S.jap

Chr1

3,530

1,573

-

-

-

Chr2

590

234

147

0

-

pCHQ1

225

102

11

23

-

pUT1

45

8

-

-

-

 

pUT2

9

-

-

-

-

  1. N. aro = Novosphingobium aromaticivorans DSM 12444; E. lit = Erythrobacter litoralis; S. ala = Sphingopyxis alaskenis; S. wit = Sphingomonas wittichii; Z. mob = Zymomonas mobilis 11163; Z. mobZ = Zymomonasmobilis ZM4; S. jap = Sphingonium japonicum.
  2. The protein-coding genes identified in PP1Y are compared with those of several genomes and plasmids.
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BMC Genomics

ISSN: 1471-2164

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