Time course experiments | ||||||
---|---|---|---|---|---|---|
ID | Medium | Conditions | OD600 | Time pt | Time from t0 | Label |
1 | Nutrient broth | 25 C | 1 | 0 | Â | temp t0 |
2 | Nutrient broth | 37 C | 0.65 | 1 | 20m | temp t1 |
3 | Nutrient broth | 37 C | 1 | 2 | 63m | temp t2 |
4 | Nutrient broth | 37 C | 1.25 | 3 | 78m | temp t3 |
5 | Nutrient broth | 37 C | 1.5 | 4 | 96m | temp t4 |
6 | Nutrient broth | pH 9 | 0.6 | 0 | Â | pH t0 |
7 | Nutrient broth | pH 4 | 0.7 | 1 | 15m | pH t1 |
8 | Nutrient broth | pH 4.5 | 1 | 2 | 15h | pH t2 |
9 | Nutrient broth | pH 4.5 | 1.2 | 3 | 15.6h | pH t3 |
10 | Nutrient broth | pH 5+ | 1.6 | 4 | 15.3h | pH t4 |
11 | Nutrient broth | no salt | 0.6 | 0 | Â | salt t0 |
12 | Nutrient broth | 350mM NaCl | 0.7 | 1 | 15m | salt t1 |
13 | Nutrient broth | 350mM NaCl | 1 | 2 | 107m | salt t2 |
14 | Nutrient broth | 350mM NaCl | 1.2 | 3 | 147m | salt t3 |
15 | Nutrient broth | 350mM NaCl | 1.5 | 4 | 201m | salt t4 |
16 | M9 succinate | 80mM PO4 | 1 | 0 | Â | PO4 t0 |
17 | M9 succinate | 40mM PO4 | 0.6 | 1 | 15m | PO4 t1 |
18 | M9 succinate | 40mM PO4 | 0.9 | 2 | 97m | PO4 t2 |
19 | M9 succinate | 40mM PO4 | 1.2 | 3 | 160m | PO4 t3 |
20 | M9 succinate | 20mM PO4 | 0.6 | 4 | 188m | PO4 t4 |
21 | M9 succinate | 20mM PO4 | 0.6 | 5 | 363m | PO4 t5 |
Five replicates for all conditions, except samples at pH 4.5 with 3 replicates. | ||||||
Single time point experiments | ||||||
ID | Medium | Temp | Replicates | Description | Label | |
22 | M9 succinate | 16 | 4 | temp 16 C | 16°C | |
23 | M9 succinate | 37 | 4 | temp 37 C | 37°C | |
24 | M9 succinate | 37 | 1 | 70 mM phosphate | PO4 | |
25 | M9 succinate | 37 | 1 | 40 mM phosphate | low PO4 | |
26 | M9 succinate | 37 | 1 | anaerobic | N | |
27 | M9 succinate | 37 | 1 | anaerobic + CO2 | N + CO2 | |
28 | M9 succinate | 37 | 1 | nitrogen-limited | low N | |
29 | M9 succinate | 37 | 1 | sulfur-limited | low sulfur | |
30 | M9 succinate | 37 | 1 | solid media | solid | |
31 | M9 succinate | 37 | 1 | 50 mM Mg++ | high Mg | |
32 | M9 succinate | 37 | 1 | 5 uM Mg++ | low Mg | |
33 | M9 succinate | 37 | 1 | 0.07g/L EDTA | EDTA | |
34 | M9 succinate | 37 | 1 | 0.07g/L EDTA with nutrient-limit | EDTA/limit | |
35 | M9 succinate | 37 | 1 | +0.1% phenol | phenol | |
36 | M9 succinate | 37 | 1 | +200 ppm Bleach | bleach | |
37 | M9 succinate | 37 | 1 | +5% EtOH | ethanol | |
38 | M9 glucose | 25 | 1 | M9-glucose | glucose | |
39 | M9 galactose | 37 | 1 | M9-galactose | galactose | |
40 | M9 proline | 37 | 1 | M9-proline | proline | |
41 | Luria broth | 25 | 4 | temp 25 C | 25°C | |
42 | Luria broth | 37 | 4 | temp 37C | 37°C | |
43 | Luria broth | 41 | 4 | temp 41 C | 42°C | |
44 | Luria broth | 37 | 4 | pH 9 | pH 9 | |
45 | Luria broth | 37 | 4 | pH 5 | pH 5 | |
46 | Luria broth | 37 | 4 | 80mM Peroxide | H202 | |
47 | Luria broth | 37 | 2 | 0.5M NaCl | NaCl | |
48 | Calf serum | 37 | 4 | CS infusion, temp 37 C | 37°C | |
49 | Calf serum | 37 | 1 | antibiotics | antibiotics | |
50 | Calf serum | 37 | 1 | antibiotics + 0.07g/L EDTA | antibiotics + EDTA | |
51 | Calf serum | 37 | 1 | aspirin | salicylate | |
52 | Brain heart | 37 | 1 | solid media | solid | |
53 | Tryptic soy | 37 | 1 | kan mutant | kan mutant | |
54 | Tryptic soy | 37 | 1 | wt | wt |