Skip to main content

Table 3 Target predictions with q-value < 0.5 from CopraRNA and details of the top significant matches

From: Differential expression of small RNAs from Burkholderia thailandensis in response to varying environmental and stress conditions

sRNA# Total Target q-value Energy sRNA mRNA Definition
1 5 BTH_I0117 0.03528 −23.340 164..191 −56..-27 gp31
BTH_I1738 0.04661 −24.158 159..185 5..29 hypothetical protein
BTH_II0675 0.04661 −22.376 164..192 −79..-54 aspartate-semialdehyde dehydrogenase Asd
BTH_II1093 0.07311 −15.108 159..185 −170..-140 Ser/Thr protein phosphatase
BTH_I2063 0.07311 −20.982 163..189 15..47 L D-carboxypeptidase A LdcA
13 43 BTH_I1527 0.00000 −10.280 273..298 −69..-47 transglycosylase SLT domain-containing protein
BTH_I1319 0.00341 −24.103 133..193 −128..-73 tRNA delta(2)-isopentenylpyrophosphate transferase MiaA
BTH_II1420 0.04465 −13.661 250..260 8..18 hypothetical protein
BTH_I0403 0.04465 −17.257 201..238 −32..16 hypothetical protein
BTH_I0216 0.05922 −13.297 50..88 −43..1 ATP-dependent protease domain-containing protein
BTH_I0248 0.06071 −13.886 159..190 −43..-14 flagellar rod assembly protein/muramidase FlgJ
BTH_I0386 0.09037 −15.127 175..210 −158..-122 lipoyl synthase LipA
BTH_I1901 0.09529 −12.224 386..423 36..77 phosphoesterase
BTH_II1524 0.19532 −11.366 298..319 −65..-46 acetyltransferase
BTH_II0792 0.28030 −13.522 159..200 −64..-28 endo-1 4-D-glucanase
19 52 BTH_I2095 0.00000 −15.900 60..73 −53..-40 hypothetical protein
BTH_I2094 0.00002 −63.187 1..47 −199..-153 osmolarity response regulator OmpR
BTH_I0740 0.10640 −22.588 16..86 16..96 3-deoxy-manno-octulosonate cytidylyltransferase KdsB
BTH_II0267 0.10640 −21.664 179..222 −56..-10 rhsD protein
BTH_I1820 0.10640 −23.421 16..86 16..94 histidine ammonia-lyase HutH
BTH_I3024 0.12057 −28.055 123..217 −9..86 shikimate kinase AroK
BTH_II0267 0.14266 −21.664 179..222 −56..-10 rhsD protein
BTH_II2237 0.14266 −18.893 61..77 −176..-160 MmgE/PrpD family protein
BTH_I2472 0.14266 −18.732 28..82 −63..-1 ribose operon repressor RbsR
BTH_I2817 0.16248 −17.933 177..220 −197..-156 short chain dehydrogenase
36 4 BTH_II1509 0.00117 −14.418 67..87 −25..-4 MgtC family protein
BTH_I0673 0.43725 −40.259 19..86 −186..-115 DNA-binding response regulator
BTH_II1525 0.43725 −28.046 51..87 −88..-52 transporter
BTH_I3260 0.43725 −17.695 20..87 −135..-78 ATP-dependent DNA helicase Rep
39 13 BTH_I3274 0.00865 −13.184 87..121 −160..-130 phage integrase family site specific recombinase
BTH_I0763 0.05339 −12.897 61..98 −132..-97 ATP-dependent Clp protease ATP-binding subunit ClpA
BTH_I1300 0.11325 −8.769 115..122 64..71 DNA repair protein RecN
BTH_I1594 0.21103 −11.949 82..105 63..86 cold-shock domain-contain protein
BTH_I3232 0.21103 −9.560 117..125 54..62 phage integrase family site specific recombinase
BTH_I1062 0.26265 −17.617 67..83 47..64 NADH dehydrogenase subunit B
BTH_I0425 0.26265 −13.815 87..121 −109..-70 hypothetical protein
BTH_I2768 0.28525 −8.492 61..83 69..94 phosphate regulon transcriptional regulatory protein PhoB
BTH_I1282 0.38899 −9.640 4..12 −83..-75 catalase/peroxidase HPI
   BTH_II0671 0.48561 −12.524 112..127 27..46 bkd operon transcriptional regulator