BMC Genomics

Table 1 Sequence relatedness of Ii DIRs

From: The dirigent multigene family in Isatis indigotica: gene discovery and differential transcript abundance

	a	b	c	d	e	f	g	h	i	j	k	l	m	n	o	p	q	r	s
IiDIR1(a)	-
IiDIR2(b)	76.9	-
IiDIR3(c)	63.8	70.0	-
IiDIR4(d)	65.0	69.4	90.0	-
IiDIR5(e)	25.0	24.4	20.6	19.4	-
IiDIR6(f)	25.6	24.4	20.6	19.4	91.9	-
IiDIR7(g)	25.6	26.3	23.8	22.5	63.1	66.3	-
IiDIR8(h)	25.0	25.6	23.1	21.9	62.5	66.3	96.3	-
IiDIR9(i)	21.3	20.0	18.8	17.5	39.4	40.6	45.0	43.8	-
IiDIR10(j)	18.1	19.4	19.4	18.8	41.3	41.9	45.6	44.4	71.3	-
IiDIR11(k)	22.5	26.3	22.5	20.6	44.4	45.6	43.8	43.8	41.9	46.3	-
IiDIR12(l)	18.1	18.8	14.4	15.6	19.4	20.0	20.6	21.3	18.8	17.5	19.4	-
IiDIR13(m)	*17.5*	*20.0*	*15.6*	*14.4*	23.1	23.1	23.1	23.8	20.6	21.3	20.6	16.9	-
IiDIR14(n)	*17.5*	*19.4*	*15.6*	*14.4*	23.8	23.8	23.8	24.4	21.9	22.5	21.3	17.5	95.6	-
IiDIR15(o)	*17.5*	*19.4*	*15.6*	*14.4*	23.8	23.8	23.8	24.4	21.3	21.9	21.3	17.5	97.5	98.1	-
IiDIR16(p)	*20.0*	*20.6*	*17.5*	*16.9*	24.4	24.4	25.6	24.4	23.8	23.1	26.9	20.0	41.3	41.3	41.9	-
IiDIR17(q)	*18.1*	*18.8*	*15.6*	*15.0*	21.3	23.8	23.8	22.5	22.5	21.3	25.6	18.8	42.5	42.5	43.1	90.0	-
IiDIR18(r)	*15.6*	*18.8*	*16.9*	*16.3*	25.0	23.1	26.9	25.6	24.4	25.6	24.4	16.9	50.6	50.6	50.6	55.0	56.3	-
IiDIR19(s)	*15.6*	*18.8*	*15.6*	*15.0*	24.4	22.5	26.3	25.0	23.1	23.1	25.6	16.3	51.9	51.9	51.9	54.4	55.6	91.9	-

Results from pairwise amino acid sequence comparisons, using complete open reading frames, show as percent identity among members of the DIR-a, DIR-b/d and DIR-e subfamilies. Comparisons within the subfamily are printed as normal, whereas comparisons between proteins of the subfamilies DIR-a and DIR-b/d, DIR-a and DIR-e, and DIR-b/d and DIR-e are highlighted in italic, underline, and bold, respectively.

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com