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Table 2 Comparison of genome characteristics (based on IMG-ER server)

From: Comparative genome analysis of pathogenic and non-pathogenic Clavibacter strains reveals adaptations to their lifestyle

Genome Name Clavibacter michiganensis subps. michiganensis NCPPB 382 Clavibacter michiganensis subsp. sepedonicus ATCC 33113 Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 Non-pathogenic Clavibacter LMG 26808
Accession number a NC_009480.1 NC_010407.1 NC_020891.1 AZQZ00000000
Host tomato potato maize *
Disease bacterial wilt and canker potato ring rot wilt and blight non-pathogenic
Size 3395237 3403786 3063596 3476455
Genes 3169 3168 2936 3282
CDS 3107 3117 2890 3218
CDS (%) 98.04 98.39 98.43 98.05
RNA 62 51 46 64
rRNA 6 6 6 7
tRNA 45 45 30 46
Enzymes 759 712 740 750
CRISPR 1 0 0 1
GC% 72 72 73 72
Coding bases 3041059 2955244 2823671 3074588
Signalp b 281 234 219 140
Signalp (%) 8.87 7.39 7.46 4.27
Homologs to LMG 26808 (%) c 2716 (87.4) 2457 (78.8) 2531 (87.5) -
  1. a Only the Genbank records of the chromosomes are given.
  2. b Number of genes coding signal peptides.
  3. c Calculated using a Genome Gene Best Homologs tool included in IMG-ER server.
  4. *Isolated from tomato seeds, host unknown.