Table 2 Comparison of genome characteristics (based on IMG-ER server)
Genome Name | Clavibacter michiganensis subps. michiganensis NCPPB 382 | Clavibacter michiganensis subsp. sepedonicus ATCC 33113 | Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 | Non-pathogenic Clavibacter LMG 26808 |
|---|---|---|---|---|
Accession number a | NC_009480.1 | NC_010407.1 | NC_020891.1 | AZQZ00000000 |
Host | tomato | potato | maize | * |
Disease | bacterial wilt and canker | potato ring rot | wilt and blight | non-pathogenic |
Size | 3395237 | 3403786 | 3063596 | 3476455 |
Genes | 3169 | 3168 | 2936 | 3282 |
CDS | 3107 | 3117 | 2890 | 3218 |
CDS (%) | 98.04 | 98.39 | 98.43 | 98.05 |
RNA | 62 | 51 | 46 | 64 |
rRNA | 6 | 6 | 6 | 7 |
tRNA | 45 | 45 | 30 | 46 |
Enzymes | 759 | 712 | 740 | 750 |
CRISPR | 1 | 0 | 0 | 1 |
GC% | 72 | 72 | 73 | 72 |
Coding bases | 3041059 | 2955244 | 2823671 | 3074588 |
Signalp b | 281 | 234 | 219 | 140 |
Signalp (%) | 8.87 | 7.39 | 7.46 | 4.27 |
Homologs to LMG 26808 (%) c | 2716 (87.4) | 2457 (78.8) | 2531 (87.5) | - |