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Table 3 Mobile genetic elements found in the genome of LMG 26808 (Based on the annotation results from IMG-ER, RAST and EDGAR)

From: Comparative genome analysis of pathogenic and non-pathogenic Clavibacter strains reveals adaptations to their lifestyle

CDS identifiers

COG

COG annotation

Pfam

Position

Length (bp)

Cl_00892

COG4974

Site-specific recombinase XerD, phage_integrase

pfam00589

Contig 3 (50199 to 51350)

1152

Cl_00935

COG4974

Site-specific recombinase XerD, phage_integrase

pfam00589

Contig 5 (8554 to 9540)

987

Cl_01562

COG4974

Site-specific recombinase XerD, phage_integrase

pfam00589

Contig 5 (682570 to 683556)

987

Cl_01811

COG1842

Phage shock protein A (IM30), suppresses sigma54-dependent transcription

pfam04012

Contig 5 (938633 to 939376)

744

Cl_01968

COG3600

Uncharacterized phage-associated protein

pfam13274

contig 7 (7492 to 7956)

753

Cl_03043

COG4679

Phage-related protein

pfam05973

contig 15 (974 to 1303)

330

Cl_03056

COG4974

Site-specific recombinase XerD, phage_integrase

pfam00589

contig 15 (22760 to 23485)

726

Cl_03252

COG4974

Site-specific recombinase XerD, phage_integrase

pfam00589

contig 46 (189 to 866)

678

Cl_02713

COG2452

Predicted site-specific integrase-resolvase

pfam12728

contig 11 (350076 to 350522)

447

Cl_03047

COG2801

Transposase and inactivated derivatives, Tnp1, IS3_IS150

pfam01527

contig 15 (9545 to 11077)

1533

Cl_03189

-

Transposase DDE domain, Tnp1, IS1380

pfam01609

contig 28 (1417 to 2532)

1116

Cl_03190

COG4644

Transposase and inactivated derivatives, TnpA family, Tn3

pfam01526

contig 28 (4206 to 5753)

1530

Cl_03209

COG4644

Transposase and inactivated derivatives, TnpA family, Tn3

pfam01526

contig 33 (10984 to 12801)

1818

Cl_03210

COG3316

Transposase and inactivated derivatives, IS6

pfam13610

contig 33 (12848 to 13552)

705

Cl_03211

COG2801

Transposase and inactivated derivatives, IS3_IS150

pfam13276

contig 33 (14010 to 13498)

513

Cl_03212

COG2963

Transposase and inactivated derivatives, Tnp1, IS3

pfam01527

contig 33 (14489 to 14343)

147

Cl_03214

COG3316

Transposase and inactivated derivatives, IS6

pfam13610

contig 34 (391 to 116)

276

Cl_03235

-

Transposase, Tnp1, IS5_IS903

pfam13737

contig 39 (1373 to 2212)

840

Cl_03261

-

Transposase DDE domain, Tnp1, IS4

pfam01609

contig 51 (1 to 1188)

1188

Cl_03204

-

Mobile element protein

-

contig 33 (530 to 366)

165

peg.1244

-

Mobile element protein

-

contig 28 (149 to 742)

594

Cl_03063

-

Mobile element protein

-

contig 15 (32765 to 34252)

1488

peg.807

-

Resolvase-like

-

contig 15 (6452 to 6847)

396

peg.1245

-

Tn1 transposase

-

contig 28 (741 to 1088)

348

Cl_03045

-

Gifsy-2 prophage protein

-

contig 15 (7251 to 7544)

294

Cl_03251

-

putative bacteriophage protein

-

contig 45 (3200 to 4171)

972

Cl_01918

-

elements of external origin; phage-related functions and prophages

-

contig 6 (14793 to15281)

489