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Table 3 Mobile genetic elements found in the genome of LMG 26808 (Based on the annotation results from IMG-ER, RAST and EDGAR)

From: Comparative genome analysis of pathogenic and non-pathogenic Clavibacter strains reveals adaptations to their lifestyle

CDS identifiers COG COG annotation Pfam Position Length (bp)
Cl_00892 COG4974 Site-specific recombinase XerD, phage_integrase pfam00589 Contig 3 (50199 to 51350) 1152
Cl_00935 COG4974 Site-specific recombinase XerD, phage_integrase pfam00589 Contig 5 (8554 to 9540) 987
Cl_01562 COG4974 Site-specific recombinase XerD, phage_integrase pfam00589 Contig 5 (682570 to 683556) 987
Cl_01811 COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription pfam04012 Contig 5 (938633 to 939376) 744
Cl_01968 COG3600 Uncharacterized phage-associated protein pfam13274 contig 7 (7492 to 7956) 753
Cl_03043 COG4679 Phage-related protein pfam05973 contig 15 (974 to 1303) 330
Cl_03056 COG4974 Site-specific recombinase XerD, phage_integrase pfam00589 contig 15 (22760 to 23485) 726
Cl_03252 COG4974 Site-specific recombinase XerD, phage_integrase pfam00589 contig 46 (189 to 866) 678
Cl_02713 COG2452 Predicted site-specific integrase-resolvase pfam12728 contig 11 (350076 to 350522) 447
Cl_03047 COG2801 Transposase and inactivated derivatives, Tnp1, IS3_IS150 pfam01527 contig 15 (9545 to 11077) 1533
Cl_03189 - Transposase DDE domain, Tnp1, IS1380 pfam01609 contig 28 (1417 to 2532) 1116
Cl_03190 COG4644 Transposase and inactivated derivatives, TnpA family, Tn3 pfam01526 contig 28 (4206 to 5753) 1530
Cl_03209 COG4644 Transposase and inactivated derivatives, TnpA family, Tn3 pfam01526 contig 33 (10984 to 12801) 1818
Cl_03210 COG3316 Transposase and inactivated derivatives, IS6 pfam13610 contig 33 (12848 to 13552) 705
Cl_03211 COG2801 Transposase and inactivated derivatives, IS3_IS150 pfam13276 contig 33 (14010 to 13498) 513
Cl_03212 COG2963 Transposase and inactivated derivatives, Tnp1, IS3 pfam01527 contig 33 (14489 to 14343) 147
Cl_03214 COG3316 Transposase and inactivated derivatives, IS6 pfam13610 contig 34 (391 to 116) 276
Cl_03235 - Transposase, Tnp1, IS5_IS903 pfam13737 contig 39 (1373 to 2212) 840
Cl_03261 - Transposase DDE domain, Tnp1, IS4 pfam01609 contig 51 (1 to 1188) 1188
Cl_03204 - Mobile element protein - contig 33 (530 to 366) 165
peg.1244 - Mobile element protein - contig 28 (149 to 742) 594
Cl_03063 - Mobile element protein - contig 15 (32765 to 34252) 1488
peg.807 - Resolvase-like - contig 15 (6452 to 6847) 396
peg.1245 - Tn1 transposase - contig 28 (741 to 1088) 348
Cl_03045 - Gifsy-2 prophage protein - contig 15 (7251 to 7544) 294
Cl_03251 - putative bacteriophage protein - contig 45 (3200 to 4171) 972
Cl_01918 - elements of external origin; phage-related functions and prophages - contig 6 (14793 to15281) 489