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Table 2 Top 50 up-regulated probe sets in the prostate tumor type

From: Gene expression profiling of 49 human tumor xenografts from in vitro culture through multiple in vivo passages - strategies for data mining in support of therapeutic studies

Prostate mouse & human probe set ID

Prostate gene symbol

Prostate P0->P1 average fold change

# Mouse cross-Hyb tissues

Prostate human probe set ID

Prostate gene symbol

Prostate P0->P1 average fold change

231628_s_at

SERPINB6

8.169

5

202859_x_at

IL8

5.290

216405_at

 

6.239

5

206336_at

CXCL6

5.190

217683_at

HBE1

6.171

5

209183_s_at

C10orf10

4.672

202859_x_at

IL8

5.290

 

223333_s_at

ANGPTL4

4.479

206336_at

CXCL6

5.190

 

211506_s_at

IL8

4.451

209183_s_at

C10orf10

4.672

 

201438_at

COL6A3

4.328

204470_at

CXCL1

4.551

1

212977_at

CXCR7

4.231

223333_s_at

ANGPTL4

4.479

 

1570537_a_at

 

4.170

211506_s_at

IL8

4.451

 

211756_at

PTHLH

4.153

201438_at

COL6A3

4.328

 

203828_s_at

IL32

3.987

217572_at

 

4.301

5

241436_at

SCNN1G

3.967

212977_at

CXCR7

4.231

 

214157_at

GNAS

3.756

1570537_a_at

 

4.170

 

221009_s_at

ANGPTL4

3.744

211756_at

PTHLH

4.153

 

213711_at

KRT81

3.485

203828_s_at

IL32

3.987

 

206300_s_at

PTHLH

3.460

241436_at

SCNN1G

3.967

 

1569978_x_at

 

3.456

215076_s_at

COL3A1

3.775

5

211071_s_at

MLLT11

3.355

202912_at

ADM

3.763

1

201578_at

PODXL

3.249

214157_at

GNAS

3.756

 

222449_at

PMEPA1

3.230

221009_s_at

ANGPTL4

3.744

 

205199_at

CA9

3.189

224344_at

COX6A1

3.700

5

201890_at

RRM2

3.106

213711_at

KRT81

3.485

 

211030_s_at

SLC6A6

3.100

201852_x_at

COL3A1

3.483

5

222608_s_at

ANLN

3.062

206300_s_at

PTHLH

3.460

 

210095_s_at

IGFBP3

3.028

1569978_x_at

 

3.456

 

207291_at

PRRG4

3.006

211071_s_at

MLLT11

3.355

 

209774_x_at

CXCL2

2.979

201578_at

PODXL

3.249

 

211161_s_at

COL3A1

2.974

222449_at

PMEPA1

3.230

 

206157_at

PTX3

2.970

205199_at

CA9

3.189

 

203373_at

SOCS2

2.969

201890_at

RRM2

3.106

 

232381_s_at

DNAH5

2.929

211030_s_at

SLC6A6

3.100

 

212143_s_at

IGFBP3

2.928

1570107_at

 

3.091

5

238513_at

PRRG4

2.922

222608_s_at

ANLN

3.062

 

201291_s_at

TOP2A

2.911

210095_s_at

IGFBP3

3.028

 

202404_s_at

COL1A2

2.908

207291_at

PRRG4

3.006

 

205479_s_at

PLAU

2.892

209270_at

LAMB3

3.002

2

205680_at

MMP10

2.803

209774_x_at

CXCL2

2.979

 

217875_s_at

PMEPA1

2.797

211161_s_at

COL3A1

2.974

 

230280_at

TRIM9

2.763

206157_at

PTX3

2.970

 

227556_at

NME7

2.723

203373_at

SOCS2

2.969

 

242517_at

KISS1R

2.699

232381_s_at

DNAH5

2.929

 

218691_s_at

PDLIM4

2.688

212143_s_at

IGFBP3

2.928

 

219148_at

PBK

2.684

238513_at

PRRG4

2.922

 

203691_at

PI3

2.684

201291_s_at

TOP2A

2.911

 

202998_s_at

LOXL2

2.681

202404_s_at

COL1A2

2.908

 

210538_s_at

BIRC3

2.669

223484_at

C15orf48

2.896

1

229435_at

GLIS3

2.667

205479_s_at

PLAU

2.892

 

41469_at

PI3

2.649

227140_at

INHBA

2.830

1

218355_at

KIF4A

2.624

211668_s_at

PLAU

2.829

1

214438_at

HLX

2.623

205680_at

MMP10

2.803

 

209156_s_at

COL6A2

2.597

  1. Left table includes all probe sets, the mouse RNA binding probe sets are identified by the number of cross hybridizing mouse tissue probes that occurred (1-5 see column 4). Right side of table shows the top 50 human up-regulated probe sets following removal of the mouse component.
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BMC Genomics

ISSN: 1471-2164

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