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Table 2 Top 50 up-regulated probe sets in the prostate tumor type

From: Gene expression profiling of 49 human tumor xenografts from in vitro culture through multiple in vivo passages - strategies for data mining in support of therapeutic studies

Prostate mouse & human probe set ID Prostate gene symbol Prostate P0->P1 average fold change # Mouse cross-Hyb tissues Prostate human probe set ID Prostate gene symbol Prostate P0->P1 average fold change
231628_s_at SERPINB6 8.169 5 202859_x_at IL8 5.290
216405_at   6.239 5 206336_at CXCL6 5.190
217683_at HBE1 6.171 5 209183_s_at C10orf10 4.672
202859_x_at IL8 5.290   223333_s_at ANGPTL4 4.479
206336_at CXCL6 5.190   211506_s_at IL8 4.451
209183_s_at C10orf10 4.672   201438_at COL6A3 4.328
204470_at CXCL1 4.551 1 212977_at CXCR7 4.231
223333_s_at ANGPTL4 4.479   1570537_a_at   4.170
211506_s_at IL8 4.451   211756_at PTHLH 4.153
201438_at COL6A3 4.328   203828_s_at IL32 3.987
217572_at   4.301 5 241436_at SCNN1G 3.967
212977_at CXCR7 4.231   214157_at GNAS 3.756
1570537_a_at   4.170   221009_s_at ANGPTL4 3.744
211756_at PTHLH 4.153   213711_at KRT81 3.485
203828_s_at IL32 3.987   206300_s_at PTHLH 3.460
241436_at SCNN1G 3.967   1569978_x_at   3.456
215076_s_at COL3A1 3.775 5 211071_s_at MLLT11 3.355
202912_at ADM 3.763 1 201578_at PODXL 3.249
214157_at GNAS 3.756   222449_at PMEPA1 3.230
221009_s_at ANGPTL4 3.744   205199_at CA9 3.189
224344_at COX6A1 3.700 5 201890_at RRM2 3.106
213711_at KRT81 3.485   211030_s_at SLC6A6 3.100
201852_x_at COL3A1 3.483 5 222608_s_at ANLN 3.062
206300_s_at PTHLH 3.460   210095_s_at IGFBP3 3.028
1569978_x_at   3.456   207291_at PRRG4 3.006
211071_s_at MLLT11 3.355   209774_x_at CXCL2 2.979
201578_at PODXL 3.249   211161_s_at COL3A1 2.974
222449_at PMEPA1 3.230   206157_at PTX3 2.970
205199_at CA9 3.189   203373_at SOCS2 2.969
201890_at RRM2 3.106   232381_s_at DNAH5 2.929
211030_s_at SLC6A6 3.100   212143_s_at IGFBP3 2.928
1570107_at   3.091 5 238513_at PRRG4 2.922
222608_s_at ANLN 3.062   201291_s_at TOP2A 2.911
210095_s_at IGFBP3 3.028   202404_s_at COL1A2 2.908
207291_at PRRG4 3.006   205479_s_at PLAU 2.892
209270_at LAMB3 3.002 2 205680_at MMP10 2.803
209774_x_at CXCL2 2.979   217875_s_at PMEPA1 2.797
211161_s_at COL3A1 2.974   230280_at TRIM9 2.763
206157_at PTX3 2.970   227556_at NME7 2.723
203373_at SOCS2 2.969   242517_at KISS1R 2.699
232381_s_at DNAH5 2.929   218691_s_at PDLIM4 2.688
212143_s_at IGFBP3 2.928   219148_at PBK 2.684
238513_at PRRG4 2.922   203691_at PI3 2.684
201291_s_at TOP2A 2.911   202998_s_at LOXL2 2.681
202404_s_at COL1A2 2.908   210538_s_at BIRC3 2.669
223484_at C15orf48 2.896 1 229435_at GLIS3 2.667
205479_s_at PLAU 2.892   41469_at PI3 2.649
227140_at INHBA 2.830 1 218355_at KIF4A 2.624
211668_s_at PLAU 2.829 1 214438_at HLX 2.623
205680_at MMP10 2.803   209156_s_at COL6A2 2.597
  1. Left table includes all probe sets, the mouse RNA binding probe sets are identified by the number of cross hybridizing mouse tissue probes that occurred (1-5 see column 4). Right side of table shows the top 50 human up-regulated probe sets following removal of the mouse component.