Quantitative trait loci analysis of fiber quality traits using a random-mated recombinant inbred population in Upland cotton (Gossypium hirsutum L.)

Table 3 Genomic distribution of 1582 polymorphic SSR markers used for genotyping the 275 RILs of Set 1

Chromosome	#Marker loci	Starts	Ends	Total cM covered by markers	Whole chromosome (cM)^*	% of the chromosome	#Gaps larger than 20 cM (largest gap)
Chr.01	59	2.71	128.05	125.34	152.4	82%	1 (24.35)
Chr.02	49	4.8	121.8	117.00	133.96	87%
Chr.03	80	23.61	156.51	132.90	159.4	83%	1 (23.61)
Chr.04	38	23.61	100.4	76.79	110.65	69%	1 (23.61)
Chr.05	125	6.89	129.16	122.27	141.4	86%
Chr.06	50	33.7	156.19	122.49	154.6	79%	1 (33.7)
Chr.07	67	17.24	153.8	136.56	168.73	81%
Chr.08	61	6.9	169.2	162.30	191	85%	2 (27.51)
Chr.09	75	25.6	125.6	100.00	146.06	68%	2 (25.6)
Chr.10	48	5.4	184.23	178.83	184.23	97%	1 (37.13)
Chr.11	75	13.34	203.74	190.40	228.17	83%	2 (24.43)
Chr.12	86	3.94	115.4	111.46	119.22	93%
Chr.13	58	10.15	122.9	112.75	131.4	86%
Chr.14	82	0	130.23	130.23	133.1	98%
Chr.15	96	22.5	150.3	127.80	230.77	55%	2 (80.47)
Chr.16	75	17.6	119.5	101.90	139.53	73%	1 (20.03)
Chr.17	44	20.8	132.1	111.30	132.1	84%	1 (20.8)
Chr.18	50	6.9	114	107.10	121.05	88%
Chr.19	116	24.54	185.54	161.00	189.9	85%	1 (24.54)
Chr.20	74	0	153.97	153.97	168.1	92%	1 (20.38)
Chr.21	72	25.75	167.8	142.05	173.91	82%	1 (25.75)
Chr.22	49	5.75	97.2	91.45	108.2	85%
Chr.23	66	32.74	146.16	113.42	170.92	66%	2 (32.47)
Chr.24	56	7.35	152.81	145.46	173.84	84%	2 (21.03)
Chr.25	48	20	141.8	121.80	154.44	79%	1 (20.78)
Chr.26	75	0	148.98	148.98	152.7	98%
unmapped	250
Total	2024				4069.78	83%

ISSN: 1471-2164