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Table 4 Enzymes involved in the biosynthesis of precursors of mono-, sesqui- and diterpenes

From: RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters

Abbreviation Name Chr SGN nr Expression values JA* Expression values C* Fold JA induction
AACT acetoacetyl-coenzyme A thiolase 5 SGN-U566720 351.04 275.21 1.27
  7 SGN-U566719 126.3 133.52 0.94
HMGS 3-hydroxy-3-methylglutaryl-CoA synthase 8 SGN-U579858 14.96 15.98 0.93
  8 SGN-U578388 205.34 123.57 1.66
HMGR 3-hydroxy-3-methylglutaryl-CoA reductase 2 SGN-U580675 2.2 1.06 2.07
  2 SGN-U578017 19.2 22.19 0.86
  3 SGN-U579319 43.35 24.5 1.77
MVK mevalonate kinase 1 SGN-U567385 198.89 125 1.59
pMVK phosphomevalonate kinase 8 SGN-U583971 46.92 54.51 0.86
MDC mevalonate diphosphate decarboxylase 4 SGN-U587221 3.4 3.19 1.06
  11 SGN-U581971 26.68 35.51 0.75
DXS1 1-deoxy-D-xylulose 5-phosphate synthase 1 1 SGN-U567647 24.14 35.33 0.68
DXS2 1-deoxy-D-xylulose 5-phosphate synthase 2 11 SGN-U582996 37.23 22.72 1.64
DXR 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3 SGN-U585813 657.7 497.34 1.32
MCT 4-diphosphocytidyl-2-C-methyl-D-erythritol synthase 1 SGN-U566797 107.95 121.45 0.89
CMK 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1 SGN-U583224 275.9 237.57 1.16
MDS 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 8 SGN-U568497 36.72 41.73 0.88
HDS 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 11 SGN-U567167 30.43 12.25 2.48
HDR 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase 1 SGN-U580658 2916.93 2720.54 1.07
IDI isopentenyl diphosphate isomerase 5 SGN-U569721 3.4 1.95 1.74
   4 SGN-U577516 957.4 749.11 1.28
GPS geranyl diphosphate synthase 8 SGN-U573523 2.71 3.36 0.8
NDPS (CPT1) neryl diphosphate synthase 8 SGN-U583641 2810.51 4696.4 0.6
FPS farnesyl diphosphate synthase 12 SGN-U580757 11.05 9.76 1.13
  10 SGN-U578686 0.68 1.24 0.55
  10 SGN-U581576 15.98 25.21 0.63
GGPS geranyl geranyl diphosphate synthase 4 SGN-U571085 6.12 7.46 0.82
  9 SGN-U575882 63.58 66.05 0.96
  2 SGN-U573348 17.17 34.8 0.49
CPT3 cis-prenyl transferase 3 3 SGN-U572901 14.45 17.58 0.82
CPT4 cis-prenyl transferase 4 10 SGN-U568982 9.52 7.28 1.3
CPT5 cis-prenyl transferase 5 10 SGN-U585528 120.17 70.3 1.7
CPT7 cis-prenyl transferase 7 6 SGN-U574892 291.53 471.59 0.62
  1. Chr; chromosome.
  2. *Expression values are in RPKM (reads per kilobase of transcript per million mapped reads).
  3. For an overview of the biosynthetic pathway see Figure 1.
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BMC Genomics

ISSN: 1471-2164

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