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Table 1 List of differentiated genes within general function categories and their representation across different comparisons based on single gene analysis and in each cluster based for the hierarchical clustering analysis

From: In absence of local adaptation, plasticity and spatially varying selection rule: a view from genomic reaction norms in a panmictic species (Anguilla rostrata)

General function categories Comparisons Cluster
Gene name (within families)             
Cell protection and immunity T0 BW FW MR GRB 1 2 3 4 5 6 7
Alpha2-macroglobulin 1 ~ 1 1 ~ _ _ _ _ _ _ _
*Aminopeptidase 5 1 12 15 6 4 1 _ 7 1 _ _
Bactericidal/permeability-increasing protein ~ ~ ~ ~ ~ _ _ 1 _ _ _ _
Complement component 2 ~ 1 ~ 1 _ _ 1 _ _ _ _
Dipeptidyl peptidase 4 1 1 ~ ~ ~ _ _ _ _ _ _ _
Elastase inhibitor ~ ~ ~ ~ ~ 1 _ _ _ _ _ _
Heat shock protein 2 ~ ~ 1 ~ _ _ _ _ _ _ _
Hemolytic toxin avt-1 ~ ~ ~ ~ ~ 1 _ 3 _ _ _ _
*Lactose-binding lectin I-2 ~ ~ ~ ~ ~ _ _ 2 _ _ _ _
Laminin receptor 1 ~ ~ ~ 1 _ _ _ _ _ _ _
*Lectin (β-galactoside-binding) 1 ~ ~ 3 2 1 1 _ _ _ _ _
Lysozyme G 1 ~ ~ ~ 1 _ _ _ _ _ _ _
*Beta-2 Microglobulin ~ ~ ~ ~ ~ _ 1 _ _ _ _ _
*Mucin 1 ~ 1 1 1 2 _ 1 _ 1 _ _
£*Myosin regulatory light chain kinase 1 1 ~ ~ ~ _ _ _ _ _ _ _
Nattectin ~ ~ ~ ~ ~ _ _ _ _ 11 _ _
*Pentraxin ~ 1 1 1 ~ _ 1 _ _ _ _ _
Proteasome (link with ubiquitin) 1 ~ ~ 1 1 _ _ 1 _ _ _ _
*Serine (or cysteine) proteinase inhibitor, clade B 1 2 ~ ~ ~ _ _ _ _ _ _ _
Superoxide dismutase ~ ~ ~ ~ ~ _ _ 1 _ _ _ _
T-cell receptor beta chain ~ ~ ~ ~ ~ 1 _ _ _ _ _ _
*Tumor necrosis α factor ~ ~ ~ ~ ~ 1 _ _ _ _ _ _
Detoxification T0 BW FW MR GRB 1 2 3 4 5 6 7
Amine oxidase ~ ~ 2 ~ 1 _ _ _ _ _ _ _
*Glutathione S-transferase 1 1 ~ ~ 1 _ _ 1 _ _ _ _
*Metallothionein 1 ~ ~ 1 1 ~ _ _ _ _ _ _ _
Energy metabolism & respiration (digestion) T0 BW FW MR GRB 1 2 3 4 5 6 7
*Adenine nucleotide translocator 2 ~ ~ ~ ~ _ _ _ _ _ _ _
Adenylate cyclase 1 ~ ~ ~ ~ _ _ _ _ _ _ _
Ataxin 1 ~ ~ ~ ~ _ _ _ _ _ _ _
ATP synthase 1 ~ ~ 1 1 1 _ _ _ _ _ _
ATP h + transporting f1 ~ ~ ~ ~ ~ _ _ 1 _ _ _ _
Chitinase ~ ~ ~ 1 1 _ 1 _ _ _ _ _
Cystatin 1 ~ 1 1 ~ _ _ 1 _ _ _ _
*Cytochrome c oxydase 22 10 7 3 17 10 _ 6 _ _ _ _
Enolase 1 1 2 4 ~ _ _ _ 3 _ _ 1
Ferritin, heavy polypeptide 3 ~ ~ 1 2 _ _ _ _ _ _ _
Gastrotropin 1 2 1 ~ 2 _ _ _ _ _ _ _
*GDP-fucose transporter ~ ~ ~ ~ ~ 1 _ _ _ _ _ _
Glycosyltransferase ~ ~ 1 1 1 _ _ _ _ _ _ _
Glutaminyl-tRNA synthase 1 ~ 1 ~ ~ _ _ _ _ _ _ _
*Hemoglobin cathodic alpha chain 2 ~ 2 ~ ~ _ _ _ _ _ _ _
Katanin 2 ~ ~ 1 ~ _ _ _ _ _ _ _
Lactate dehydrogenase ~ 1 ~ ~ ~ _ _ _ _ _ _ _
Lipase 2 1 3 ~ 1 1 1 _ _ _ _ _
*Maltase-glucoamylase 3 1 1 3 2 _ 1 3 _ _ _ _
¥*Na.K-ATPase 1 2 ~ 1 1 _ _ _ _ _ _ _
*NADH dehydrogenase 1 2 ~ ~ 1 1 _ _ _ _ _ _
Pyridine nucleotide-disulphide oxidoreductase 1 ~ ~ ~ ~ _ _ _ _ _ _ _
RAG1-activating protein 1 homolog ~ ~ 1 ~ ~ _ _ _ _ _ _ _
SH3 domain binding glutamic acid-rich-like protein 1 ~ ~ 1 1 _ _ 1 _ _ _ _
*Solute carrier 15 2 ~ 2 ~ 5 _ _ 1 _ _ _ _
Triosephosphate isomerase ~ ~ 1 1 ~ _ _ _ _ _ _ _
UGT1ab ~ ~ ~ ~ ~ 1 _ _ _ _ _ _
Growth, differentiation, development T0 BW FW MR GRB 1 2 3 4 5 6 7
Actinin 1 ~ ~ ~ ~ _ _ _ _ _ _ _
Basic helix-loop-helix protein 2 (bHLHB2) Class B ~ ~ ~ 1 ~ _ _ _ _ _ _ _
Calpain 1 ~ ~ ~ 1 _ 1 _ _ _ _ _
Caspase 1 ~ ~ ~ ~ _ _ _ _ _ _ _
*Cathepsin 2 ~ ~ 2 1 _ _ 2 _ _ _ _
CCAAT/enhancer binding ~ ~ 1 ~ ~ 1 _ _ _ _ _ _
Chemotaxin (leucocyte cell derived) 2 16 2 ~ 22 6 20 _ _ _ _ _
¥*Claudin 5 1 3 3 6 3 _ 3 _ _ _ _
*CUB and zona pellucida-like domain-containing protein 1 ~ ~ 2 ~ 2 _ _ _ _ _ _ _
*Elongation factor 1-alpha 2 ~ 3 ~ 1 _ 1 _ _ _ _ _
Ependymin precursor ~ ~ ~ ~ ~ 1 _ _ _ _ _ _
Epithelial membrane protein ~ ~ ~ ~ ~ _ _ 1 _ _ _ _
Galectin 3 ~ 2 5 ~ _ _ _ _ _ _ _
GTPase slip-gc ~ ~ ~ ~ ~ 1 _ _ _ _ _ _
Heart of glass protein ~ ~ ~ ~ ~ 1 _ _ _ _ _ _
*Keratin 3 4 3 2 3 _ _ 2 _ _ _ 2
Neuronal guanine nucleotide exchange factor ~ ~ 1 ~ ~ _ _ _ _ _ _ _
*Nephrosin astacin-like metalloendopeptidase 1 ~ ~ ~ ~ _ _ _ _ _ _ _
*Profilin 1 2 ~ 1 1 _ 3 1 _ _ _ _
¥S100 calcium binding protein 4 ~ 2 1 ~ 2 _ 2 _ _ 1 _
*Sciellin isoform a ~ ~ ~ ~ 1 1 _ _ _ _ _ _
Transcription factor INI ~ ~ 1 ~ ~ _ _ _ _ _ _ _
*Uroplakin 2 2 ~ 1 2 ~ _ _ 1 _ _ _ _
Zona pellucida glycoprotein 1 ~ 1 ~ ~ _ _ 11 _ _ _ _
Membrane transporters and carrier proteins T0 BW FW MR GRB 1 2 3 4 5 6 7
Annexin 5 1 3 ~ 2 _ _ 1 _ _ _ _
*Apolipoproteins 7 4 1 12 6 4 _ 1 1 _ 2 1
Cytolysin ~ ~ ~ ~ ~ _ _ 4 _ _ _ _
Glutamyl aminopeptidase ~ ~ ~ ~ ~ 1 _ _ _ _ _ _
Signal transduction T0 BW FW MR GRB 1 2 3 4 5 6 7
*Angiotensin 1 ~ ~ ~ 1 _ _ _ _ _ _ _
*Cytochrome P450 2 ~ ~ ~ ~ _ _ _ _ _ _ _
*Ictacalcin ~ ~ ~ ~ ~ _ _ 4 _ _ _ _
¥*Inositol(myo)-1(or 4)-monophosphatase 1 ~ 1 ~ 1 1 1 _ _ _ _ _ _
*Interferon-induced gene 2 ~ ~ ~ ~ ~ 2 _ 6 _ _ 1 _
KDELR1 1 4 ~ 7 7 _ _ 9 _ _ _ _
£Protein kinase C delta type ~ ~ ~ ~ ~ _ _ 1 _ _ _ _
Myelin ~ ~ ~ ~ ~ _ _ 2 _ _ _ _
*Prolactin 2 ~ ~ ~ ~ _ _ _ _ _ _ _
*Secretogranin III 1 ~ ~ ~ ~ _ _ _ _ _ _ _
Selenium binding protein 1 1 ~ ~ 1 1 _ _ _ _ _ _ _
T-lymphocyte maturation-associated protein 2 ~ ~ ~ 2 _ _ _ _ _ _ _
Ubiquitin 1 ~ ~ ~ ~ _ _ _ _ _ _ _
*Zymogen granule ~ ~ ~ ~ ~ 1 _ _ _ _ _ _
Structural/ junctional complex T0 BW FW MR GRB 1 2 3 4 5 6 7
Actin alpha 1, skeletal muscle 1 ~ ~ ~ ~ _ _ _ _ _ _ _
Cofilin 2 ~ 1 2 ~ 2 _ 3 _ _ _ _
*Collagen 1 ~ 2 ~ 1 1 _ _ _ _ _ _
High choriolytic enzyme 1 precursor ~ ~ ~ ~ ~ _ 2 _ _ _ _ _
Mesothelin 1 ~ ~ ~ ~ 1 _ _ _ _ _ _
Type i cytoskeletal protein ~ ~ ~ ~ ~ 1 _ _ _ _ _ _
Transcription/ translation T0 BW FW MR GRB 1 2 3 4 5 6 7
Neurogenic differentiation factor 1 ~ ~ ~ ~ 1 _ _ _ _ _ _ _
Polymerase 1 ~ ~ ~ ~ _ _ _ _ _ _ _
PHD finger-like ~ ~ ~ ~ ~ 1 _ _ _ _ _ _
RNA-binding protein ~ ~ ~ ~ ~ 1 _ _ _ _ _ _
*Ribosomal protein 26 7 27 8 17 8 7 10 _ _ 1 _
Translation initiation factor 1 ~ ~ ~ ~ 1 _ _ _ _ _ _
  1. *Indicates homologs identified in the study of Kalujnaia et al. [48], ¥indicate those identified in Whitehead et al. (2011) and £those identified in Hoffman et al. [48].
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