Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts

Table 1 General genome properties of the eight P. ananatis strains

Strain	Sequence status	Source	Lifestyle	Chromosome			Plasmid			Ref
Strain	Sequence status	Source	Lifestyle	Size (Mb) G + C% #CDS			Size (Kb) G + C% #CDS			Ref
AJ13355	Complete	Soil	Saprophyte	4.56	53.8	4,019	322	53.4	272	[15]
LMG20103	Complete	Eucalyptus	Pathogen	4.39	53.7	3,955	317	52.1	270	[16]
LMG5342	Complete	Human	Clinical isolate	4.61	53.5	4,098	303	51.5	255	[17]
PA13	Complete	Rice	Pathogen	4.59	53.7	4,156	281	52.3	238	[18]
LMG2665^T	Draft	Pineapple	Pathogen	4.48^a	53.5	4,043	306	51.8	259	-
PA4	Draft	Onion	Pathogen	4.57^a	53.7	4,152	313	52.2	263	-
BD442	Draft	Maize	Pathogen	4.45^a	53.6	4,049	353	51.1	320	-
B1-9	Draft	Onion	Plant-growth promoter	4.51^a	53.7	4,074	314	51.7	267	[9]

The isolation source and predicted biological roles for each strain are shown. The P. ananatis genome consists of a chromosome and a large plasmid (LPP-1). The sizes, G + C contents (%) and number of proteins encoded on each replicon are indicated. ^aindicates the genomes for which genome sizes were estimated based on the sum of contig lengths.

ISSN: 1471-2164