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Table 1 Running times of the different programs on a test set of 100,000 reads

From: Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing

 

Vidjil

HighV-QUEST

IgBlast

time

18s

1 hour

3m 50s

availability

standalone

website

website, standalone

  1. Vidjil (version 2013.10) and IgBlast (version 1.2.0) were launched on a laptop with a 2 GHz processor (1 core used) and 8 GB of memory. IMGT/HighV-QUEST (version 3.2.31) was launched on the IMGT web server. The web server of IMGT/HighV-QUEST is limited to 500,000 sequences.
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BMC Genomics

ISSN: 1471-2164

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